Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9 132 6e-26 >seq9 Length=1292822 Score = 132 bits (146), Expect = 6e-26 Identities = 351/534 (66%), Gaps = 3/534 (1%) Strand=Plus/Minus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||| | || |||||||| ||| | ||| || || | | |||| ||||| || Sbjct 487052 AACAAGAGGCAGGCAAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAG 486993 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 ||||| | |||||||| | || | || || | |||||| | | ||| || || ||| Sbjct 486992 AAGGTGAGACCTGGCATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCA 486933 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 |||||||| || || || || ||||| || || ||||| ||| | | ||||| || Sbjct 486932 GAAAAGAAGATTCCCTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCC 486873 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || ||||||||| | ||| | || ||| | | || ||| || ||| Sbjct 486872 TTGTCCGAAATCCATCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCA 486813 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || | || || | | | ||| || || | || || || ||||| | ||| Sbjct 486812 ATGGCGTCGAACAGGTATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAA 486753 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||| || |||||||| || || || || ||||| ||||| || |||| ||| Sbjct 486752 CTGTACATCTCCGAGTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCC 486693 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | || ||| || ||| |||| | | | | |||||||| || || |||||| Sbjct 486692 TCGGGTATTTGGACTTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCA 486633 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATA-AT 37643 || || |||||||| ||||| || | | || | |||||| |||| || | | | Sbjct 486632 CTGGCAGCAAAGAAGGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGT 486573 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | |||| |||| ||||||||| | || ||||| || | ||||| ||| Sbjct 486572 TCACTCCAGTCATGTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAA 486519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316503841600