Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9 122 7e-23 seq14 86.0 5e-12 >seq9 Length=1292822 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || ||||||||||| || || ||||| |||| | || | |||| || Sbjct 436690 AACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCATCCTC 436749 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||||| || || || ||||| ||||| ||||| || ||||||||||| ||||| || Sbjct 436750 CAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTG 436809 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || ||| | || | ||||| |||| ||| ||||| | |||| || || Sbjct 436810 GATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCTT 436869 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || || || || || ||||| Sbjct 436870 GCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 113 bits (124), Expect = 4e-20 Identities = 147/202 (73%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||||||||| || || ||||| |||| | |||| | |||| || | ||| Sbjct 436925 TGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGT 436984 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || | || || ||||| || ||||| || || || || |||||||| Sbjct 436985 TTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATTTTG 437044 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | ||||||||||| || || || ||||||| || || || || Sbjct 437045 CTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTC 437104 Query 101447 AAAGTTTTTACAAATATCTGCA 101468 | ||| || || | ||| |||| Sbjct 437105 AGAGTCTTGACGACTAT-TGCA 437125 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 ||||| || || || ||||| | | || | |||| ||||| ||||| || ||||| Sbjct 436481 TCTTTCTGGATGTTATAATCCGACAATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAG 436540 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 || | ||||||||||| || ||||| || ||||| ||||| || || || ||| | Sbjct 436541 ATGAGGCGCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTGCTCTTCACATTA 436600 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | || || || |||||||||| || |||| ||||| || || || || || ||| Sbjct 436601 TCGATTGTATCCGAGCTTTCCACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACA 436660 Query 101459 AATATCTGCATG 101470 || ||||||||| Sbjct 436661 AAGATCTGCATG 436672 >seq14 Length=1110587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| ||||| || || |||||||| |||| || ||| | | | || || | ||| Sbjct 440963 ATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGGAGAGAGTCCGGCCGTCTTCGAGTTG 440904 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||| || || || |||| |||||||||||||| || ||||| || || ||| Sbjct 440903 CTTGCCGGCGAAGATCAGTCGCTGTTGATCGGGTGGGATGCCCTCCTTGTCT 440852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278206814280