Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9 109 4e-19 >seq9 Length=1292822 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| | ||||||||||| || || || ||||| || | | ||| | || Sbjct 436459 CAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGTCCGACCATC 436518 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| |||||||| || || ||||||||||| | ||||| ||||| ||||| Sbjct 436519 TTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACCCTCTTTGTC 436578 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | | || || ||||| || | || || || Sbjct 436579 TTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCACTTCGAGTGTGATGGT 436638 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || ||||| || || ||||| |||||||| Sbjct 436639 TTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || || ||||| || ||||| |||| | || || | || ||||| || || Sbjct 436937 TCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAG 436996 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || ||||| || ||||||| ||||| ||||||||||| ||| || |||||| Sbjct 436997 ATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATTTTGCTCTTTACATTG 437056 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||||| || || || || || |||| ||| || || Sbjct 437057 TCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTCTTGAC 437115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937414292920