Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9 150 3e-31 >seq9 Length=1292822 Score = 150 bits (166), Expect = 3e-31 Identities = 542/841 (64%), Gaps = 10/841 (1%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || ||||| ||||| | ||||| |||||||| || || || | | ||||| || ||| Sbjct 487331 TGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTGTCC 487272 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||||| |||||| || | || || | | | ||| | | || || Sbjct 487271 ATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGTAGA 487212 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA- 48018 |||| || || | || ||||||| ||| | ||| ||||||||| | | | Sbjct 487211 CGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAATGCG 487152 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| || ||| | ||||||||||| | ||| ||| || || || | || | Sbjct 487151 CACGG-CAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATGTC 487093 Query 48079 CT-TAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | || ||| | || ||| ||| ||| | ||||| | |||| |||||||| Sbjct 487092 TTCTACCGCCTG-CTTTGATGGTCTGTGGTTTAGGTGGGAGAACAAGAG---GCAGGCAA 487037 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 | || | |||| || ||||| || ||| ||| | || |||||| |||||| |||| Sbjct 487036 AATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGCA 486977 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | || | || |||||||| || | | ||||| |||||||| |||||||| |||| Sbjct 486976 TCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCCT 486917 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || || ||||| || || | | | |||| | | |||||| || ||||| Sbjct 486916 CGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCATC 486857 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 ||| ||||||| || || || |||||| || || || || ||||| ||| || | Sbjct 486856 GAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGGT 486797 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 | | | || ||| | || || | || | ||||||||| |||| Sbjct 486796 ATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGAGT 486737 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||| || || || |||||| || ||||| | || |||| Sbjct 486736 GAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGACTT 486677 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || |||| || | ||||| |||||||| || ||||| ||||||||||||| Sbjct 486676 CGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAAGG 486617 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA---GCATTCCAGCCCTGTA 48614 ||||||| || | ||| | | |||| | | | ||| || ||||| | ||| Sbjct 486616 CAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCATGTT 486557 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||||| |||||| |||||||| | |||||||| || || ||||| || |||| Sbjct 486556 GATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATACA 486497 Query 48675 T 48675 | Sbjct 486496 T 486496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532334233600