Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq29 116 2e-20 seq9 102 5e-16 >seq29 Length=320926 Score = 116 bits (128), Expect = 2e-20 Identities = 347/531 (65%), Gaps = 6/531 (1%) Strand=Plus/Minus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| ||||||||||||||||| || ||||||||||||| | ||| |||| || || Sbjct 306474 GAAATCATTGCCAATGACCAAGGCAACCGAACAACACCATCCTTTGTCGCTTTCACAGAT 306415 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | ||| ||||| || | || || |||| | || ||||| || || Sbjct 306414 ACTGAGCGTCTGATTGGTGACTCAGCCAAGAATCAGGTCGCCATGAATCCCTCCAACACG 306355 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || || | |||| ||||| || || | ||| | || || | ||| Sbjct 306354 GTCTTCGACGCAAAGCGTCTGATCGGTCGCAAATTCGCCGATGCTGAAGTTCAGGCCGAT 306295 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || |||| | | || || ||||| || | | || Sbjct 306294 ATGAAGCACTTCCCCTTCGAGGTCGTTGACAAGGGCGGCAAACCGGTCATCAAGGTCGAA 306235 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | ||||| | || || |||| || | || || || ||||| || ||| Sbjct 306234 TTCAAG--GGTGAGAGCAAGTTCTTCACACCAGAGGAGATCTCATCTATGGTCTTGACCA 306177 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | ||| | | || || ||| ||||| ||||| || | | || || | ||| Sbjct 306176 AGATGCGAGAGACTGCTGAG-TCATACCTTGGTGGTACTGTCAACAACGCCGTCGTCACT 306118 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || |||||||| || || || || ||||| ||||| || |||||||| || || || Sbjct 306117 GTCCCAGCATACTTCAACGACTCACAACGACAAGCCACCAAAGATGCCGGCCTGATCGCT 306058 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || || || ||||| || ||||| || || || || | || ||||||||| Sbjct 306057 GGTCTCAACGTCTTGCGCATTATCAACGAACCTACCGCCGCTGCCATCGCCTATGGTCTT 305998 Query 474869 GATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 || ||||| | || || || || || ||||||||| ||| ||| Sbjct 305997 GACAAGAAGGCCGAGGGTGAGCGCAACGTCTTGATCTTTGATCTTGGCGGT 305947 >seq9 Length=1292822 Score = 102 bits (112), Expect = 5e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| ||| |||||| | || || || | ||| || Sbjct 436906 ACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGT 436965 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | |||||| ||||| || ||||| || ||||| ||||| ||||| || ||||| || Sbjct 436966 TCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACC 437025 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||| ||||| || || ||| || ||||| |||| Sbjct 437026 CTCCTTGTCCTGAATTTTGCTCTTTACATTGTCGATAGTGTCAG 437069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177484205920