Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=3800214 Score = 150 bits (166), Expect = 2e-31 Identities = 268/387 (69%), Gaps = 7/387 (2%) Strand=Plus/Minus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 ||||||| ||||| ||||| ||||| || || || |||||||| || ||||| || | || Sbjct 1887766 CAATAGGTCCTACCCCAGGCCCTCCCCCACCGTGAGGAATACAAAAGGTCTTGTGGAGAT 1887707 Query 138247 TTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTA 138306 | || || || ||||||||||| ||| | || || || || | || ||||| | Sbjct 1887706 TAAGGTGGCACACATCTGCACCTATGTCTCCCGGATTGCAGAGGCCCATTTGCGCATTCA 1887647 Query 138307 GATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTC 138366 || || || || | ||| || ||||| |||| ||||||||||| || | | | Sbjct 1887646 AGTTCGCGCCGTCCATATAGACTTGACCTCCATGCTCATGAACGATAGAGCAGACGTTTT 1887587 Query 138367 TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGTT 138426 |||| | | |||||| || ||| || |||||||| || ||||| ||| | ||||| Sbjct 1887586 TGATTTCCGGTTCAAACACTCCAAAGGTAGATGGATAGGTGATCATGATAGCAGCGAGTT 1887527 Query 138427 CA--AATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA---TC 138481 || ||| || | | | |||| || | ||| | ||||| | |||||| | Sbjct 1887526 CATCCTTGTGTTGCTCACACTTGTCTT-TC-AAATCCTCAATGTCCAGATTGCCAGTTTT 1887469 Query 138482 ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGT 138541 ||||||| || | || |||||||||||||||||| | ||||| ||||| || || Sbjct 1887468 GGCATCACATTTCAAGGGGACCACTTTCATTCCTGCCATGGCAGCACTGGCAGGGTTTGT 1887409 Query 138542 TCCATGTGCTGACTCTGGTATCAGACA 138568 |||||| || || | || ||||| || Sbjct 1887408 TCCATGAGCAGAGACCGGGATCAGGCA 1887382 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || |||||||| ||||| |||||||| | | || |||||||| || || ||| | Sbjct 1885968 CATGGCTTCTGCTGCCGCAGTAGCTTCATCCAGCACTGACGCGTTTGCAATCGGCAATGC 1885909 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || || |||| | |||||| |||| | | || |||||||| |||||| | Sbjct 1885908 TGTCAGGTCAGTGACCATGGTTTGGAAATTCAGCAGAGATTCCAATCGTCCCTGGCTGAC 1885849 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||||| || |||||| ||||||||| ||| |||||||||||||||||| Sbjct 1885848 TTCAGCTTGATATGGTGTGTAACTTGTGTACCATGCAGGGCTCTCAAGAACGTTTCGCTT 1885789 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 ||||| ||| || ||| |||||||| || Sbjct 1885788 GATGACCTCCGGTACAAAGGTCCCATAGTAACC 1885756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998110500800