Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18 141 3e-28 seq9 113 1e-19 seq11 91.5 4e-13 seq2 91.5 4e-13 >seq18 Length=894979 Score = 141 bits (156), Expect = 3e-28 Identities = 499/772 (65%), Gaps = 13/772 (2%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGT-CGCTGTATTCTACAATCTCACAGCA 155650 || |||||||| || || || ||| | | || |||||||||| ||||||||| ||| Sbjct 724599 GATGCCAGATTGCAAACTGCGACCTCATC-TGGTGCGCTGTATTCAACAATCTCAGTGCA 724541 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 || || || || ||| || || | ||||||||||| || ||||||| ||||| Sbjct 724540 GAGATTGGAGCTTCGGATAGTCCCAAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATC 724481 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 ||| || || ||||| || || || ||||| |||| | || ||||| |||||| Sbjct 724480 CTTATAAAGCATGTACGGCGTCCCAGTCTCTGTCTGAGACTCAAGAATTGCATACCAGAG 724421 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTAT-CTGCCTTCCGACTCATATTTCATATACAGCG 155829 | |||| || | |||| | | ||||||| ||| ||| || || || | Sbjct 724420 TTTCTGGGCCTTCACA-GCTTTCCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTG 724362 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | | || ||||| || ||| ||| || || || | ||||| || || | Sbjct 724361 CCTCGAACTCGTCACCATACACATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAG 724302 Query 155890 ACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946 ||| || || || ||| |||| | ||| |||| || | ||| | ||||| Sbjct 724301 TCCAGTCAAGATTCTTCTCGA---CACGTTTCATGAATAGGTCTGGGGTCCAGAGAGCAT 724245 Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 |||| || || | ||| ||||| | |||||||||||| || || || || || | Sbjct 724244 AGAAGAGATCTCGGGCCCGGCTTTCCTCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGT 724185 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGC 156063 | | || | ||| |||||| ||||| ||||| || ||| | | | |||| Sbjct 724184 CAAAGACGTCGGCATGCCATGGCTCAAGATATATAGCGAAGGCACCCGGACGCTTGTTGC 724125 Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 | || ||||| ||||| ||||| || || |||||||| | || ||||||| | | || | Sbjct 724124 CGCCTTGATCGACATAACGAGCGGTGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGT 724065 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 |||| | ||||| || || | ||| | ||||||| | ||||| |||| | | Sbjct 724064 TGGATGACCCATTTGTGCCACCAATGTAGGAACCAGTAGCGCGAATGCAGTGAACGTTGA 724005 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 | |||||||| || | || || || || || || | ||| | | | || | Sbjct 724004 GCCCAATACCTCCAGCGTTCTTGGAGATCATGGCACAGATTTTGAGAGTGTCGTAGATGC 723945 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 |||||||| || |||| ||| | || |||| || || || | | |||| Sbjct 723944 CTTCAATACTGTCCTCTTTCATATCGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTG 723885 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 | ||||||||||| || ||||| | ||||| | || |||| | ||||| Sbjct 723884 TACCAGCGTTGAACAGCGTAGGAGAAGCATGTGTGAAGAACTTTTGGGACAT 723833 >seq9 Length=1292822 Score = 113 bits (124), Expect = 1e-19 Identities = 392/604 (65%), Gaps = 22/604 (4%) Strand=Plus/Plus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || || |||||||| |||||||| ||||| ||||||| | | ||| ||| || Sbjct 486616 GCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATTTTCAGGC 486675 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 ||||| ||| | |||| || || ||| ||||| | || || |||||| || || Sbjct 486676 GAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATGGAGAACATT 486735 Query 133352 CATTCT---ATC-ACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAA 133407 || || || ||| || | | ||||| || |||||||| || | || | Sbjct 486736 CACTCGGAGATGTACAGTTTGT----TGATTGACACGTACATCAAGGAGCCAAAACAAAG 486791 Query 133408 GCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 || | || ||| |||||||| | ||||||| || ||| ||| | ||||||| Sbjct 486792 ACAATACCTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAACTGGGC 486851 Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 | || |||||| ||||||| ||| ||||||| || || ||||| || || | Sbjct 486852 TCTTCGATGGATTTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGCCTTCGCAGC 486911 Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587 || ||||| || || || ||| | ||| ||| | |||||||| || |||||||| Sbjct 486912 CGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAAGAAGCGTGG 486971 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | || || || || || || || || || || | ||||||| || || || Sbjct 486972 CCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAGGGTCTGCATAC 487031 Query 133648 CGAATTTGCCG-----TTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAG 133702 || |||||| || | || | ||||| | || |||| ||||| | | | Sbjct 487032 AGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACCACAG--ACCA-TCAAA--GCAGGCG 487086 Query 133703 ATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTG 133762 | ||||| || || | || || || | || ||| || ||| ||| | ||||||| Sbjct 487087 GTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTTCTCACTGATGCTCTG 487146 Query 133763 CCGTGCCGTTTAATTGGTATGAAT--GATGTGCTGATGCAGCGTTATATTGAATTTGTAG 133820 |||||| || | || ||||| || | ||||| ||| || ||||||||||| | Sbjct 487147 CCGTGCGCATTGCTCGGCATGAACTCGACCT--TGATGAAGCAATACATTGAATTTGTTG 487204 Query 133821 CTGA 133824 |||| Sbjct 487205 CTGA 487208 >seq11 Length=1216349 Score = 91.5 bits (100), Expect = 4e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 252571 GCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAA 252630 || ||||| ||||| || |||||| ||||| | |||||| ||||||| || |||||| Sbjct 1153712 GCTTGCTTGCCCATGGCCGACTGGTAGGTATTACGGGGAGATTGATTGTGATCAGGGAAA 1153653 Query 252631 GGAATGCATGATGCTACA-ACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 |||||| ||| | ||| ||||| | ||| |||| ||||||||||||||||| Sbjct 1153652 GGAATG-ATGCTTGCACATACACCAAGGATCATGCTAGGGTGAATTTCACAGTG 1153600 >seq2 Length=2780111 Score = 91.5 bits (100), Expect = 4e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 ||||||||| | | ||| |||||||| | || ||||| ||| | || |||||||| Sbjct 2080777 CAGAATTTCCTTGAGACGAGGAACACCCAGAGTAACGTT---CTTTGCCGATACACCAGC 2080833 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| || |||||||| | |||||| | || ||||||||| ||| || || | Sbjct 2080834 AAAATGGAATGTGTTCAGAGTCATTTGAGTGGCAGGTTCACCAATAGATTGGGCAGCGAG 2080893 Query 301932 CATACCAACCATTTCTCCTGG 301952 | || ||||||||||| || Sbjct 2080894 GACTCCGACCATTTCTCCAGG 2080914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816845693480