Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-27 seq15 93.3 5e-13 seq9 89.7 6e-12 seq18 87.8 2e-11 >seq3 Length=2327013 Score = 140 bits (154), Expect = 4e-27 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||| ||||||||| |||| |||||| | || |||||| |||| |||||| Sbjct 2279900 GCCGCCAACTACCTTGACATCAAGGCTCTTCTCGATGTCGGCTGCAAGACTGTCGCCAAC 2279959 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct 2279960 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGCAAGACATTCAACAT 2280006 >seq15 Length=1073826 Score = 93.3 bits (102), Expect = 5e-13 Identities = 119/159 (75%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA--GGCCTCGGCG 19104 |||||||| || || || ||||| ||||| | ||| |||| || |||||||||| Sbjct 177655 GACAGCATAGGAGGAACCGTGACCTGCGTCATCAGGAAC-TGCCC-CATCGGCCTCGGCG 177712 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | || ||||| ||||| | || ||| |||||| ||||||||||| || || || | Sbjct 177713 AACCCTGCTTCGACAAACTAGAAGCCATGCTCGCGCACGCCATGCTCAGCATACCCGCGA 177772 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGCG 19202 ||||||||||||| || || ||| ||| ||||||||| Sbjct 177773 CCAAGGGATTCGAAATCGGTTCCGGATTTGGCGGGTGCG 177811 >seq9 Length=1292822 Score = 89.7 bits (98), Expect = 6e-12 Identities = 193/283 (68%), Gaps = 17/283 (6%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| ||| ||||| ||| ||||| || || |||| ||| || ||||| |||| Sbjct 487030 TATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGCATCAGGC 486971 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 | ||||||||||||||||||| | ||| ||| || || ||||| |||||||||| Sbjct 486970 CACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCCTCGACGG 486911 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACT 869348 | || ||| | | || || | ||||| ||||| |||||||| ||||| Sbjct 486910 CTGCGAAGGCAACAAGGCGTTGAGCAAA--AGTCGA----CTCCTTGTCCGAAATCCATC 486857 Query 869349 TCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAA-AGAG 869406 | ||||||| ||| ||||| | | | || | ||||| |||||| |||| || Sbjct 486856 GAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGGT 486797 Query 869407 GTGGTCCT--TTTCGGCCGGGTCCTTGACATAGGTGTCGATCA 869447 | ||| | ||| ||| ||||||| || ||||| |||| Sbjct 486796 ATTGTCTTTGTTTTGGC----TCCTTGATGTACGTGTCAATCA 486758 >seq18 Length=894979 Score = 87.8 bits (96), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 1628388 CAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCG 1628447 |||||| || |||||| || || ||||| | |||||| | || | | || Sbjct 724333 CAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGACACGTTT 724274 Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| || ||||| ||||| || || || ||||| || || |||||| | |||||||| Sbjct 724273 CATGAATAGGTCTGGGGTCCAGAGAGCATAGAAGAGATCTCGGGCCCGGCTTTCCTCCTT 724214 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||| ||||| ||||| | |||| | | |||||| ||||| ||||| || || Sbjct 724213 GCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCTCAAGATA 724154 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| ||| |||||| |||||| Sbjct 724153 TATAGCGAAGGCACCCGGACGCTTGTTGCCGCC 724121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135917412680