Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 122 8e-23 seq5 100 3e-16 >seq9 Length=1292822 Score = 122 bits (134), Expect = 8e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||| || || || || | ||||| ||| | || Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| ||||| Sbjct 436839 GACACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 436780 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || |||||||| ||||| || |||||||||||| ||| | || |||| || || | Sbjct 436779 CAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCG-CACAC-TGTCCGACTACA 436722 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||| || ||||| |||||||| | || || || |||| || ||| Sbjct 436721 ACATTCAGAAAGAATCTACACTACATCTTGTTCTGAGACTGCGAGGTGGC 436672 Score = 116 bits (128), Expect = 3e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || ||||| || || |||||||| ||| | | Sbjct 436671 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTCG 436612 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||||||||||||||||| || || || || |||||| Sbjct 436611 GATACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 436552 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || | ||||||||||| || ||| |||| ||| ||| || | |||| ||||||| Sbjct 436551 CAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCG-GACAT-TGTCGGATTATA 436494 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || || || || | || | |||||| || |||| || ||| Sbjct 436493 ACATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGGC 436444 >seq5 Length=1929936 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || ||||| || || || || |||||||| || ||| || |||||||| | || | Sbjct 1366247 AAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATTGACAAC 1366306 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||||||||| || || || || || || ||||| ||||||| Sbjct 1366307 GTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCTGATCTTC 1366366 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAA 24891 ||||| ||||| || || ||| | | | ||||||| || || || || || Sbjct 1366367 GCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAA 1366419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897375051200