Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 105 4e-18 seq9 96.9 2e-15 >seq5 Length=1929936 Score = 105 bits (116), Expect = 4e-18 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| || || ||||| || ||| |||| |||| || ||||| || |||||||||||| Sbjct 1366419 TTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGATC 1366360 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || |||||||||||| | || | ||||| ||||| | || || |||||| | Sbjct 1366359 AGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGTCA 1366300 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || || ||||| || | || |||||||| ||||| |||||||| || ||| Sbjct 1366299 ATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGAAG 1366240 Query 34970 ATCTG--CATGATAG 34982 | || |||| ||| Sbjct 1366239 CTGTGATCATGTTAG 1366225 >seq9 Length=1292822 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || || ||||| ||||| ||||| |||||| | || |||| Sbjct 436916 AGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCT 436975 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || |||||||| ||||||||||| || | || | ||||||||||| Sbjct 436976 TCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCC 437035 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || | ||||| ||| | |||||| || | || || Sbjct 437036 TGAATTTTGCTCTTTAC--AT--TGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGAT 437091 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 |||||| || || || ||||| || Sbjct 437092 GGTCTTCCCAGTCAGAGTCTTGAC 437115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||||||| ||||| ||||| |||||| | || | || Sbjct 437198 AGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCT 437257 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 437258 TCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 437317 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || ||||||| ||| ||| |||||| || | || || Sbjct 437318 TGAATCTTGCTCTTCAC--AT--TATCGATAGTATCACTGGACTCGACCTCGAGAGTGAT 437373 Query 34942 GGTCTTTCCCGT 34953 |||||| || || Sbjct 437374 GGTCTTGCCGGT 437385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692641224760