Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9 118 8e-22 seq5 84.2 2e-11 >seq9 Length=1292822 Score = 118 bits (130), Expect = 8e-22 Identities = 158/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || |||||||| || ||||| || || | | ||| || Sbjct 436912 ACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCC 436971 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| ||||| | || | || |||||||||||| ||||||||||| || Sbjct 436972 ATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTT 437031 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | || ||| | || | ||||||||| || || || ||||| | Sbjct 437032 GTCCTG-AATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGA 437090 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 | || || ||||| | || || || | ||| |||| Sbjct 437091 TGGTCTTCCCAGTCAGAGTCTTGACGACTAT-TGCA 437125 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29596 TCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATA 29654 ||||| || ||||||||||||| |||| || ||| ||| || | || ||||| ||| | Sbjct 436481 TCTTTCTGGATGTTATAATCCGACAAT-GTCCGACCATCTTCCAACTGCTTGCCGGCAAA 436539 Query 29655 TATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGT 29714 || | | || ||||| || |||||||||||||||||||| | || || ||| | Sbjct 436540 GATGAGGCGCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTGCTCTTCACATT 436599 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | || || || ||| ||||| || || || ||||| || || ||||| || || Sbjct 436600 ATCGATTGTATCCGAGCTTTCCACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGAC 436659 Query 29775 AAATATCTGCAT 29786 ||| |||||||| Sbjct 436660 AAAGATCTGCAT 436671 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| || || || || || ||||| || || | Sbjct 437183 CCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGAT 437242 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || ||||| |||||||| || | || | | ||||||||||| ||| Sbjct 437243 AGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGA 437302 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | || ||| | || | ||| ||| || || Sbjct 437303 ATACCCTCCTTGTCCTG-AATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGAC 437361 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 || ||||| || || ||||| || Sbjct 437362 CTCGAGAGTGATGGTCTTGCCGGT 437385 >seq5 Length=1929936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || || || || || | | |||||| ||| |||||||||||||| || | | Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 ||| | |||||| || || || || |||||||||||||| | || ||||| | | Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGT 1366302 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||||| || ||| || || || || || || ||||| |||| ||| || || | Sbjct 1366301 CAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 1366242 Query 29777 A 29777 | Sbjct 1366241 A 1366241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219012205640