Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq29 113 3e-19 seq1 102 6e-16 seq9 93.3 3e-13 >seq29 Length=320926 Score = 113 bits (124), Expect = 3e-19 Identities = 199/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||| || || || || || ||||| ||||| | |||| || | |||| | || Sbjct 305840 ACAAGTCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTATCACCAGCAGTAGACTTGACC 305899 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || ||||| | | ||| || | ||||| || ||||| || | |||| Sbjct 305900 TCAAAGATACCCTCTTCGATTGTCAAGAGGGAGACATCGAATGTACCACCGCCAAGATCA 305959 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || | || || || || || || ||||||||||| || | ||||| Sbjct 305960 AAGATCAAGACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCATAGGCGATGGCAGCG 306019 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || ||||| || ||||| | ||| || || |||||||| || || |||||||| Sbjct 306020 GCGGTAGGTTCGTTGATAATGCGCAAGACGTTGAGACCAGCGATCAGGCCGGCATCTTTG 306079 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||||| |||||| ||||| || ||||| || ||||| | ||||| Sbjct 306080 GTGGCTTGTCGTTGTGAGTCGTTGAAGTATGCTGGGACAGTGACGACGGC 306129 >seq1 Length=3800214 Score = 102 bits (112), Expect = 6e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||||||||| || | ||| |||||||||||||| || || || | ||| || || |||| Sbjct 745256 CAAGACCATATGCGATAGCGGCAGCAGTTGGTTCGTTGATGATGCGCAACACGTTGAGAC 745197 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 |||| || || |||||||| ||||| |||||||| ||||| ||||||||||| | Sbjct 745196 CAGCGATAGCACCAGCATCTTTGGTGGCCTGTCTTTGATTGTCGTTGAAATATGCAGGGA 745137 Query 282459 CAGT 282462 | || Sbjct 745136 CCGT 745133 >seq9 Length=1292822 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 |||||||||||||| | | | ||||| || ||||| | || || || || ||| | Sbjct 952914 TTGGCTGCATCTCCCACTAAACGTTCTTCATCCGTAAAGGCCACGTACGAGGGTGTTATT 952855 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 ||||| ||||| || || |||| ||||| ||||| || || ||| ||||| |||||| Sbjct 952854 CGATTCCCTTGGTCGTTGACAATGATTTCGACTTTTCCGTTGTGCATCACACCAACACAA 952795 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAAT 282876 | | |||||||| | |||||| ||||| Sbjct 952794 GAATAGGTTGTTCCCAGATCAATCCCAAT 952766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740628436169040