Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9 147 4e-30 >seq9 Length=1292822 Score = 147 bits (162), Expect = 4e-30 Identities = 179/239 (75%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| ||||||||||||||||| || || || || | Sbjct 436899 TACCACCACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGG 436958 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||| || ||||| |||||||| ||||| ||||| |||| ||| ||||| || | Sbjct 436959 ATAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGG 437018 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || ||||| |||||| |||||||| || || || ||| | || Sbjct 437019 GAATACCCTCCTTGTCCTGAAT-TTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCG 437077 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA-TTATTATAT 82818 || |||| ||| || ||||| || |||| ||||| || | ||| |||| ||||| || Sbjct 437078 ACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTCTTGACGACTAT-TGCAGGTATTAGAT 437135 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || | |||||| | || || |||||||||||||| || || || || || Sbjct 436673 CCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGAC 436732 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || || || ||||| | | || ||||||||||| Sbjct 436733 AGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGA 436792 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||||||||| || ||| ||||| || ||||| || || || || | ||| || Sbjct 436793 ATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTATCGATGGTGTCGGACGATTCAAC 436851 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || || |||||||| ||||| ||||| || || || ||||| Sbjct 436852 TTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 |||||||| || |||||||| || | | | ||| ||||| | || || || |||||| Sbjct 436481 TCTTTCTGGATGTTATAATCCGACAATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAG 436540 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATT 82738 || || | ||||||||||| || || || || || ||||| ||| ||||| || ||||| Sbjct 436541 ATGAGGCGCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATC-TTGCTCTTCACATT 436599 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || || ||||| ||| ||||| | || || || || |||||||| ||||| || Sbjct 436600 ATCGATTGTATCCGAGCTTTCCACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGAC 436659 Query 82799 AAATATCTGCAT 82810 ||| |||||||| Sbjct 436660 AAAGATCTGCAT 436671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826696813560