Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18 132 5e-26 seq9 114 1e-20 >seq18 Length=894979 Score = 132 bits (146), Expect = 5e-26 Identities = 598/936 (64%), Gaps = 44/936 (5%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 |||||| ||||||||||| || || || ||||| ||||| | |||| ||| || Sbjct 725379 GACTGGGATTGGTCAATGAATGCACCCCGATCAGCAGCCATCTGCACAATAGTTCG--TT 725322 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 || |||||||| | |||||||||| ||||||| | | |||||| | || Sbjct 725321 GGCTG-ATCTCCCAAACAGTCTTGTACAATGCTTTGATATCAGCAGGAATGTTGGGAATA 725263 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAAT-CTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 || || ||||||| | |||| || ||| || ||| | ||| | | || Sbjct 725262 TTTTGGACTGAGCCGCCATCAGCAATGATTCTG-TTCTTCATGTTGTCGGACCAGAGACC 725204 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 || || | || || | | ||| | |||| || ||||| || || || || || || Sbjct 725203 CAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACCTGGAATTCTCCAGCCAGGAC 725144 Query 148289 GCGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCT 148347 ||| || ||| || | || ||| | || || || |||||||||| ||||| |||| Sbjct 725143 GCGACG-AGAGTAGATATTCGAGGTATATGGCTCGAAACACTCGTTGTTTCCCAAGATCT 725085 Query 148348 GCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTT 148407 | | ||| | ||| || ||||| ||| || || || |||||||| | ||| | || Sbjct 725084 GGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAGTTGCGAACACCATGCTTGG 725025 Query 148408 TTATTTTGCGCTTCAGAGCCG-CCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATG 148466 || | ||||| ||| | |||| ||||| | ||||||||| ||| ||||||| Sbjct 725024 CGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCCGACGGTGTGACGCCCCACATG 724966 Query 148467 TCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG-----CCCTCGTACGAGCTGTACGGTC 148521 |||||||| || | || || || | ||| |||||||||| || | || Sbjct 724965 TCGTACTGAAG-----CTCGCCTTTCGAGACTGGAGAACCCTCGTACGTCTCATATGTTC 724911 Query 148522 CGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 || || | || || || ||| || ||| ||||| | || ||||| || | Sbjct 724910 CGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCATGATAGATCGTTTCAAATA 724851 Query 148582 TTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT--------TCGTACGGCATACGCAGCCG 148633 | || |||| || | || |||| ||| | |||| ||||| Sbjct 724850 TCTGGGTGTTTAGTTG--------ACGTGCTTCAGGAGAATCGAATGGCAGACGCAATGC 724799 Query 148634 CACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGA 148693 | ||| || || ||||| ||||| || || | ||||| || | ||| | ||| Sbjct 724798 AAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTCGGAAATTGCT 724739 Query 148694 GAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCAC 148753 |||| || ||||| ||||| ||| |||| ||||||| ||| || ||||| Sbjct 724738 TCGGCGTGCCTCCTCGACTGGATAATGGCTGCGTTCGATGACTCTGTTCAGGTTGCGTGT 724679 Query 148754 CACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTTG--TCATCTACGATG--C 148809 ||| |||| | | | | || |||| ||||||| | || | | || | Sbjct 724678 CACGACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGCCTCGACCAGAATCAAC 724619 Query 148810 ATCGGTTC--ACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTA 148867 || || | || | || || |||||||| || || |||||| || |||||||| Sbjct 724618 ATAAGTGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGACCTCATCTGGTGCGCTGTA 724559 Query 148868 CTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCT 148927 || || ||||| | ||| |||||| || | ||| || | |||||| || ||||| Sbjct 724558 TTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCCAAGGTTCTTCTGGTTGCT 724499 Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| |||| ||||| ||||| || ||||||||||| Sbjct 724498 CTTTTTGTTACACGCATCCTTATAAAGCATGTACGG 724463 >seq9 Length=1292822 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| || || |||||||| || ||||| ||| || ||| ||| | ||||| |||| Sbjct 436696 ATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCA-TCCTCCAGCT 436754 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | |||||||| || ||||| ||||||||||| || ||||| Sbjct 436755 GCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATCT 436814 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||||| | || || || | ||||| ||| ||||||| Sbjct 436815 TGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCTTGCCGG 436874 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| || ||||| Sbjct 436875 TCAATGTCTTGACGAAGATTTGCAT 436899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420558289600