Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9 132 1e-25 >seq9 Length=1292822 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | ||||| ||||| ||||| | ||||||||||| || || Sbjct 436668 CAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTCGGAT 436609 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| ||||| ||||| || ||| || || || Sbjct 436608 ACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 436549 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| ||||||||||||||||| |||| ||| | ||||| ||| || Sbjct 436548 CGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAACATC 436489 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| ||| | || || || |||||||| || Sbjct 436488 CAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCG 436451 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || |||||| |||| || || |||||||| |||| Sbjct 437113 CAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACACTATCGACAA 437054 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| || ||||| || || || || ||| ||||| ||| |||||||||| Sbjct 437053 TGTAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAACGACTTATCTT 436994 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || | |||||||| | || | |||| |||||| |||||||||| || Sbjct 436993 CGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATCCAGAAAGAATC 436934 Query 206364 TACTCTTCACCTTGT 206378 |||||||||||| || Sbjct 436933 TACTCTTCACCTCGT 436919 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| || ||||| ||| || ||||| |||| || ||| Sbjct 436875 ACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCCGACACCATCGATAATGTGAAGAGC 436816 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || || || | | ||||||||||| ||| Sbjct 436815 AAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAGCAGCGCTTGATCTTCGCCGGCAAG 436756 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || || |||| |||||| | |||||||| ||||| || || Sbjct 436755 CAGCTGGAGGATGGTCGCACACTGTCCGACTACAACATTCAGAAAGAATCTACACTACAT 436696 Query 206374 CTTGTTTTGAGACTTCGA 206391 |||||| ||||||| ||| Sbjct 436695 CTTGTTCTGAGACTGCGA 436678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| || || || | ||| ||||||||||| ||||| || | ||| ||| Sbjct 436451 CGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGTC 436510 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||| |||||| ||||| ||||| || || |||||| Sbjct 436511 CGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGA 436555 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||||| |||||| || || ||||| |||||||| | || ||||| | || || Sbjct 436678 TCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGT 436737 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT-AAGC 204847 | ||||| ||||||||||| ||||||||||| |||| Sbjct 436738 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGC 436775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820194316840