Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq18 91.5 1e-13 seq9 89.7 5e-13 >seq18 Length=894979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247 ||| || || ||| || || || || || ||||| ||| | | || || ||||| Sbjct 723874 GAACAGCGTAGGAGAAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAAT 723815 Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 || |||||||||||||| || ||||||| | || ||||| |||||||| || || Sbjct 723814 CGCCCTCTCGATGTCGTCGCCATGGATGCCCACAGAAACACGCATAAGCATGTGTTGGGG 723755 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367 || || || ||||| || |||||||| |||||| | ||| | |||||| | || Sbjct 723754 TCTCTCAGCTACTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCC 723695 Query 148368 AAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCATCTAGTGTCTCAGCATG 148427 || || | ||||| |||||| || || |||| || | | ||| ||||| ||| Sbjct 723694 GAAATATTGGTAATTGAAATCTCTGTCATAGACGATAGCAGAGTTCAGTTCCTCAGAATG 723635 >seq9 Length=1292822 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 ||||| | |||||| | |||| || ||||| ||| ||||| ||||||||| | Sbjct 487117 ATCGAGCAAGAGTTTCTCACTGATGCTCTGCCGTGCGCATTGCTCGGCATGAACTCGACC 487176 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGG--ACAA 47174 | ||| |||| ||||| ||||| || |||||||| ||| ||| || || |||| Sbjct 487177 TTGATGAAGCAATACATTGAATTTGTTGCTGATCGTCTACTTGTTGCT-CTTGGCAACAA 487235 Query 47175 CCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGC 47234 | || | || |||| | ||||| || || || ||| |||| || || || | ||| Sbjct 487236 C--AAGTTTTACAATGTTACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGC 487293 Query 47235 AAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 |||||||| || |||||||| || || || || ||| Sbjct 487294 AAAACCAACTTCTTCGAGAAGCGCGTGGGTGACTAT 487329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| | || ||| | ||||| | || ||||| ||||||||||||||| || || Sbjct 436679 CGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTG 436738 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| |||| | ||||| ||||||||||| |||||| Sbjct 436739 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCT 436798 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| || || |||| | || | || |||| || || ||||| | Sbjct 436799 TCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAG 436858 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||| || || | ||| || ||||| Sbjct 436859 GTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610961694400