Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq18 84.2 2e-11 >seq9 Length=1292822 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||| || || || ||||| || ||||| || ||||||||||||||| Sbjct 436673 CCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCG--G 436730 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || ||||| ||||| || || ||||| ||||||||||| || | Sbjct 436731 ACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAG 436790 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||||||||||| | Sbjct 436791 GAATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAA 436850 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || ||||| || ||||| || || || ||||| |||||||| Sbjct 436851 CTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || ||||| || || |||||||||||| | ||| | || ||| Sbjct 436919 ACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCG 436978 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || || || || | || |||||||| || || || || || || || ||| Sbjct 436979 AGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGA 437038 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | ||||| ||||| || || || ||||| ||||| || Sbjct 437039 ATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTC 437098 Query 134685 CCGGTTAAAGTTTTAACGA 134703 || || | ||| || |||| Sbjct 437099 CCAGTCAGAGTCTTGACGA 437117 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | ||| || || || ||||| || |||||||||||| Sbjct 437183 CCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGAT 437242 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||||||||| || || || | |||||||||||| || || Sbjct 437243 AGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGA 437302 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | || || || || || Sbjct 437303 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGACC 437362 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 |||||||| ||||| || ||||| Sbjct 437363 TCGAGAGTGATGGTCTTGCCGGT 437385 >seq18 Length=894979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 || ||| | || | ||| | || || || | |||||||||||| || || || || || Sbjct 724430 GCAATTCTTGAGTCTCAGACAGAGACTGGGACGCCGTACATGCTTTATAAGGATGCGTGT 724489 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || ||||| || | ||| | || || || | || |||||| ||| |||| Sbjct 724490 AACAAAAAGAGCAACCAGAAGAACCTTGGGACTATCCGAAGCTCCAATCTCTGCACTGAG 724549 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG 8406 ||||| | |||||||| || || || || || ||||||||||| || ||| || Sbjct 724550 ATTGTTGAATACAGCGCACCAGATGAGGTCGCAGTTTGCAATCTGGCATCGTTG 724603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398147300800