Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 176 4e-39 >seq9 Length=1292822 Score = 176 bits (194), Expect = 4e-39 Identities = 563/855 (66%), Gaps = 29/855 (3%) Strand=Plus/Plus Query 43733 TGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACT 43792 ||||| ||||| || ||||| | || || || ||||||||||||||||| || || | Sbjct 486490 TGGCAGATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCA 486549 Query 43793 AAAGACTTAGCAC-ATTGGATTGCA--TTAAAACCACAA-GAAAAACATTTTATATCTTT 43848 ||||| | | || | |||| || | | |||| | | |||| | | || | || Sbjct 486550 AAAGA-TCAACATGACTGGAGTGAACGTCTAAACGATGACGAAAGATACTTCGTCTCCCA 486608 Query 43849 GGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT 43908 || | || || |||||||| || || || || |||||||||||| | || || || Sbjct 486609 CGTCCTTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATT 486668 Query 43909 TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 | | ||||| ||| |||| || || || || || ||||| |||||||| || || Sbjct 486669 TTCAGGCGAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATGGA 486728 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 || ||||| ||||| ||||||||| | |||| || ||||||||||| || | || | Sbjct 486729 GAACATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGA--GCCAAAA 486786 Query 44029 GAAGCATCGAT---TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGA 44085 || | | || |||| | || || || || | ||| || | | ||||| | Sbjct 486787 CAAAGA-CAATACCTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAA 486845 Query 44086 CTGGGCCCTTAAATGGATAAATTC---AAATGATT---CTTTTGGAGAACGACTTGTCGC 44139 |||||| ||| |||||| ||| || || | |||||| |||| ||||| || Sbjct 486846 CTGGGCTCTTCGATGGAT---TTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGC 486902 Query 44140 GTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAA 44199 || |||| || || || || |||||||| || || || || | | |||||| | || Sbjct 486903 CTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAA 486962 Query 44200 GAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 ||| || || ||||||| || | || || || |||||| | || |||||| || || Sbjct 486963 GAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAGGG 487022 Query 44260 CTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATG 44319 | ||| |||||||| ||| | || | | || | || | | || ||| Sbjct 487023 TCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCT---AAACCACAGACCATCAAA 487079 Query 44320 TAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAAC 44379 || | | ||| || | |||||||| ||| || ||||| ||| | || Sbjct 487080 GCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTTCTCACTGA 487139 Query 44380 AGCATTACC-TGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAA 44437 || | || || | || | || ||||| | || |||||||| ||||| |||||| Sbjct 487140 TGCTCTGCCGTGCGCA-TTGCTCGGCATGAACTCGAC-CTTGATGAAGCAATACATTGAA 487197 Query 44438 TACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTG-TACAAAA 44496 | |||| |||||| ||||| | | || || | | || || | || ||| || Sbjct 487198 TTTGTTGCTGATCGTCTACTTGTTGCTCTTGGCAACAACAAGTTTTACAATGTTACGAAT 487257 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 ||| || || || ||||| ||||| || | | |||||||| ||||| || || || || Sbjct 487258 CCC-TTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTTCGAGAAGCG 487316 Query 44557 CGTTGGAGAATATCA 44571 ||| || || ||||| Sbjct 487317 CGTGGGTGACTATCA 487331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455806240200