Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18 123 2e-23 seq9 113 4e-20 seq5 89.7 4e-13 >seq18 Length=894979 Score = 123 bits (136), Expect = 2e-23 Identities = 338/513 (66%), Gaps = 11/513 (2%) Strand=Plus/Minus Query 131738 AAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC 131797 |||||||| || | ||| |||||||| || || | ||| | || | || || ||| Sbjct 724191 AAAAAGTCAAAGACGTCGGCATGCCATGGCTCAAGATATATAGCGAAGGCACCCGGACGC 724132 Query 131798 TTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCC 131854 || |||||||||| |||| |||| | |||||||| | ||||| ||||| || | Sbjct 724131 TTGTTGCCGCCTTGATCGACATAACGAGCGGTGTTGTTGAAGACGCGTAACATAGGAGTC 724072 Query 131855 AAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGA 131914 || ||||||| ||||| |||| ||||||| ||| | || | || |||| Sbjct 724071 AATCCGTTGGATGACCCATTTGTGCCACCAATGTAGGAACCAGTAGCGCGAATGCAGTGA 724012 Query 131915 ACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTA 131974 |||||||| ||||||||||| ||| || ||||| | || || | | ||||||| Sbjct 724011 ACGTTGAGCCCAATACCTCCAGCGTTCTTGGAGATCATGGCACAGATTTTGAGAGTGTCG 723952 Query 131975 TAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGG 132034 ||||| ||||| | |||||| | || |||| | ||||| || | ||||||| Sbjct 723951 TAGATGCCTTCAATACTGTCCTCTTTCATATCGATGAGGAAGCAGGACGCCAACTGTCCT 723892 Query 132035 TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATG 132094 || ||| || || |||| || || || ||||| || | |||| || |||| Sbjct 723891 TGCGGTGTACCAGCGTTGAACAGCGTAGGAGAAGCATGTGTGAAGAACTTTTGGGACATG 723832 Query 132095 CACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGC 132154 || | || || || |||||| ||| | ||| ||| || | || ||| Sbjct 723831 AGGTTGTAAGTTTCAATCGCCCTCTCGATGTCGTCGCCATGGATGCCCACAGAAACACGC 723772 Query 132155 ATGTACATGTGTTGAATGCGCTCGGC--CGTTTTGCCGTCGATTTTGATCAAATA--ACC 132210 || ||||||||| | ||| || | | || | | || |||| | ||| | | Sbjct 723771 ATAAGCATGTGTTGGGGTCTCTCAGCTACTTGTTTAC--CAATCTTGAGGAGATATGAAC 723714 Query 132211 GTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 | ||||||||||||||| || ||||||| ||| Sbjct 723713 G--TTCCAAAGTTTTGAAGCCGAAATATTGGTA 723683 >seq9 Length=1292822 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| | || || | ||||| ||||| ||||| ||||| ||||||||| Sbjct 436671 TGCCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGG 436730 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || ||||| || |||||| | || | ||||| ||||| || | Sbjct 436731 ACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAG 436790 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||||| | |||| | || | ||||| | | ||||| Sbjct 436791 GAATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAA 436850 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || || | ||||| |||| || || || |||||||||||| Sbjct 436851 CTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCATA 436900 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || || || || || ||||||||| Sbjct 437181 TGCCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGG 437240 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||||||||||||||| |||||| | || |||||||| |||||||| | Sbjct 437241 ATAGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGG 437300 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| | |||| | || | ||| || ||| || | Sbjct 437301 GAATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGA 437360 Query 27199 CTTCTAGAGTTATAGATTTGCCCGT 27223 | || ||||| || | ||||| || Sbjct 437361 CCTCGAGAGTGATGGTCTTGCCGGT 437385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 |||||| || |||| | ||| || | ||| || || ||||| || || || || || Sbjct 436441 ATTGCCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATC 436500 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 || | || | ||||| | ||| || ||||| | ||||| ||||||||||| || Sbjct 436501 CGACAATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGG 436560 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | ||||||||| || ||||||| | |||| | || | || || | | ||| Sbjct 436561 GGGAATACCCTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTC 436620 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||| || |||| || || |||||||| ||||| Sbjct 436621 CACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 >seq5 Length=1929936 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || ||||||||||| || | |||| | |||||||| ||||| |||||| | | Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | || || || || || || || | |||||||| || ||||||| | || | | | | Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGT 1366302 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| | || ||| || || || || || | |||||||| || || || || | Sbjct 1366301 CAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 1366242 Query 27238 AG 27239 || Sbjct 1366241 AG 1366240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934192844480