Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18 221 1e-52 seq9 107 2e-18 >seq18 Length=894979 Score = 221 bits (244), Expect = 1e-52 Identities = 1137/1780 (64%), Gaps = 49/1780 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| | |||| | | || ||||||||||| |||||||| | | Sbjct 725510 TGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATTCCCGTCTTCAAGC 725451 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGA--CTTTCCAT 117922 | | ||||| || | |||||| |||| | |||| | ||| || ||| || Sbjct 725450 CAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTAGGCTCCTTGAGAT 725391 Query 117923 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 117982 ||| | | | ||| ||||||| || ||||| |||||||| || ||||| | | Sbjct 725390 GAATATTTAGAGACT--GGGATTGGTCAATGAATGCACCCCGATCAGCAGCCATCTGCA- 725334 Query 117983 CACATCCTTCATCT--TGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 || || ||| | |||| ||||| |||||| |||| | || |||||| | || Sbjct 725333 CA-ATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATATCAGCAGGA 725275 Query 118041 ATATCCACGATATTTTGGATGGATCCACCC---GCCTTGACCATGAGATCCTTCATATCC 118097 || | |||||||||| || || || || ||| || | |||||| | Sbjct 725274 ATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTG---TTCTTCATGTTG 725218 Query 118098 TTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAA 118155 | ||||||||||| | | ||||| | || || ||| |||||| || | Sbjct 725217 TCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGG--ATTGACGACCTGGA 725160 Query 118156 ACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 | || || || ||| ||| | ||| |||||||| | || |||||||| || ||||| Sbjct 725159 ATTCTCCAGCCAGGACGCGACG-AGAGTAGATATTCGAGGTATATGGCTCGAAACACTCG 725101 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 ||||| |||||||| |||| ||||| ||||| ||||| || |||| || || ||| Sbjct 725100 TTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAGTTG 725041 Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGC-GTCCCAGTCGTAGT--TGAG-CTT 118330 || | ||| | | ||| |||| | ||| | |||| || | | | | Sbjct 725040 CGAACACCATGCTTGGCGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCCGACGG 724982 Query 118331 TGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 118390 ||| | ||| ||||| || |||| || |||| || |||| || ||||| | Sbjct 724981 TGTGACGCCC---CACATGTCGTACTGAAGCTCGCCTTTCGAGACTGGAGAACCCTCGTA 724925 Query 118391 TGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 |||||||||| || | | || | || || || ||| || | ||||| Sbjct 724924 CGTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCATGATA 724865 Query 118451 CATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 118509 || |||||||| || | | || | ||| | || | || ||||| || | || | Sbjct 724864 GATCGTTTCAAATATCTGGGTGTTTAGTTGACGTG-CTTCAGGAGAATCGAATGGCAGAC 724806 Query 118510 GGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 118569 | | || ||| |||| || ||||| || ||||| || ||||| || | ||||| | Sbjct 724805 GCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTCGGA 724746 Query 118570 TATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| |||| || || ||| || |||||| | | ||||| || || || || Sbjct 724745 AATTG--CTTCGGCGTGCCTCCTCGACTGGATAATGGCTGCGTTCGATGACTCTGTTCAG 724688 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT- 118686 || || || |||| | ||| || || | | || | || || || Sbjct 724687 GTTGCGTGTCACGACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTA-CT-CGCCTCGA 724630 Query 118687 -CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 118745 | || ||||| | ||||| || | || |||||||| || || | | |||||| Sbjct 724629 CCAGAATCAACATAAGTGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGACCTCATCT 724570 Query 118746 TTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTC 118805 | |||| || | ||| || ||||| | || || || || || || | |||| Sbjct 724569 GGTGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCCAAGGTTC 724510 Query 118806 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 || || || |||| |||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 724509 TTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCCAGTCTCT 724450 Query 118866 GTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAG--TGGCGTTGGCTC 118923 || || |||| ||||| || | ||||| | || ||||| | || | | Sbjct 724449 GTCTGAGACTCAAGAATTGCATACCAGAGTTTCTGGGCCTTCACAGCTTTCCG--ACCAC 724392 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 | || || | |||||| | ||| || || || ||||| ||||| | |||| | Sbjct 724391 GGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACACATCTGCCA 724332 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | ||||| |||| | ||||||||||||| ||| | | | || ||| || || |||| Sbjct 724331 GGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGACACGTTTCA 724272 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 |||| ||||||||| ||||||| || |||||||||| || || ||| || | | Sbjct 724271 TGAATAGGTCTGGGGTCCAGAGAGCATAGAAGAGATCTCGGGCCCGGCTTTCCTCCTTGC 724212 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | ||||| || | ||||||||||| | || || || ||||| || || || || | Sbjct 724211 CGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCTCAAGATATA 724152 Query 119164 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 |||| | ||| ||| || | || | ||||| | || ||| ||| | Sbjct 724151 TAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAGCGGTGTTGTTGA 724092 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT 119280 | || || | ||| ||| | | || | |||| |||||||| || | ||| || Sbjct 724091 AGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCACCAATGTAGGAAC 724032 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | | || | | ||| | || | |||||||| || || ||| ||||| | Sbjct 724031 CAGTAGCGCGAATGCAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTTGGAGATCATGG 723972 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 | || ||||| || ||||||| || || || ||| | || | ||||||||| Sbjct 723971 CACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCATATCGATGAGGA 723912 Query 119401 AGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 ||||| || || || | || ||||||||||||||||| || || || | || || Sbjct 723911 AGCAGGACGCCAACTG-TCCTTGCGGTGTACCAGCGTTGAACAGCGTAGGAGAAGCATGT 723853 Query 119460 ATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCC 119518 |||| | ||||||||| || ||| || || | | | | | ||||| || || Sbjct 723852 GTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCG-ATGTCGTCGCC 723794 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 || || || | || || ||||||| ||||| ||||||| Sbjct 723793 ATGGATGCCCACAGAAACACGCATAAGCATGTGTTGGGGT 723754 >seq9 Length=1292822 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || |||||||||||||| ||||| || |||||||||||| ||||| Sbjct 487041 GGCAAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACC 486982 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| || || |||||||| | ||| || | | || |||||||| |||||||| Sbjct 486981 TGGCATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGAT 486922 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || ||||| |||| || || | |||||| Sbjct 486921 TCCCTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAA 486883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434890782400