Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq18 233 2e-56 seq9 123 3e-23 >seq18 Length=894979 Score = 233 bits (258), Expect = 2e-56 Identities = 900/1390 (65%), Gaps = 39/1390 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| || | | || || ||||| || ||||| || | | || | Sbjct 723762 ACATGCTTATGCGTGTTTCTGTGGGCATCCATGGCGACGACATCGAGAGGGCGATTGAAA 723821 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | ||| || ||||||||| | |||| || || | || || || ||||| |||| Sbjct 723822 CTTACAACCTCATGTCCCAAAAGTTCTTCACACATGCTTCTCCTACGCTGTTCAACGCTG 723881 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 ||||||| | || || | |||||||| |||| | || |||||| || Sbjct 723882 GTACACCGCAAGGACAGTTGGCGTCCTGCTTCCTCATCGATATGAAAGAGGACAGTATTG 723941 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 | || ||||| | ||||| | ||||| ||||| ||| ||||| ||||||| Sbjct 723942 AAGGCATCTACGACACTCTCAAAATCTGTGCCATGATCTCCAAGAACGCTGGAGGTATTG 724001 Query 104469 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 104528 || | || | || | | || | | || ||| | || |||||||| || Sbjct 724002 GGCTCAACGTTCACTGCATTCGCGCTACTGGTTCCTACATTGGTGGCACAAATGGGTCAT 724061 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 | | || | | ||| ||| | ||||| || ||| ||| || || ||||| |||||| Sbjct 724062 CCAACGGATTGACTCCTATGTTACGCGTCTTCAACAACACCGCTCGTTATGTCGATCAAG 724121 Query 104589 CTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 104642 || ||||| ||| | |||| | ||||||||||||||||| || || Sbjct 724122 GCGGCAACAAGCGTCC---GGGTGCCTTCGCTATATATCTTGAGCCATGGCATGCCGACG 724178 Query 104643 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATC 104702 || | || || | || | || || || || | ||||| ||| ||| |||| Sbjct 724179 TCTTTGACTTTTTGGACCTTCGCAAGAATCACGGCAAGGAGGAAAGCCGGGCCCGAGATC 724238 Query 104703 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 104762 |||||| |||||||||| ||||| || |||||||| | || ||| ||| | | | Sbjct 724239 TCTTCTATGCTCTCTGGACCCCAGACCTATTCATGAAACGTGTCGAGAAGAATCTTGACT 724298 Query 104763 GGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 104822 || ||||||| || || || |||| || || || | |||| ||||| ||||| | Sbjct 724299 GGACTCTCTTCTGCCCTCACGAGGCTCCAGGCCTGGCAGATGTGTATGGTGACGAGTTCG 724358 Query 104823 AAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC---GA---CTGCGACGGTGCCAG 104876 | || |||||| | |||||| | ||||| || | || ||| || || |||| Sbjct 724359 AGGCACTTTACGAGAGATACGAGAAGGAAGGCCGTGGTCGGAAAGCTGTGAAGGC-CCAG 724417 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 | | ||| | || ||||| ||||||| || |||||||| || || ||||||| Sbjct 724418 AAAC-----TCTGGTATGCAATTCTTGAGTCTCAGACAGAGACTGGGACGCCGTACATGC 724472 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA-TTTGGGTGTGATCAAGAGT 104995 |||| || || || |||||| ||||||| || || ||||| ||||| | ||| || Sbjct 724473 TTTATAAGGATGCGTGTAACAAAAAGAGCAACCAGAAGAACCTTGGGACT-ATCCGAAGC 724531 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTGTGTGTA 105053 ||||||||||| || || || | ||| ||||| || ||||||| || || || | Sbjct 724532 TCCAATCTCTGCACTGAGATTGTTGAA--TACAGCGCACCAGATGAGGTCGCAGTTTGCA 724589 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGATTAT 105112 | || ||||| | ||||| |||| ||||| ||| | | | | | | | | || | | Sbjct 724590 ATCTGGCATCGTTGGCTCTTCCCACTTATGTTGATTCTG-GTCGAGGCGAGTACGACTTT 724648 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | ||||||||||| | || || ||||| |||||||| || || | Sbjct 724649 GGCCGCCTCCACGAAGTGGTCCAGGTCGTGACACGCAACCTGAACAGAGTCATCGAACGC 724708 Query 105173 AATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232 | ||| || || ||| || || | ||| | |||| | || |||||||| Sbjct 724709 AGCCATTATCCAGTCGAGGAGGCACGCCGAAGCAATTTCCGACATAGACCTATTGGTCTT 724768 Query 105233 GGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291 |||||||||||||| || |||| ||| | | ||| || | |||| ||||| || Sbjct 724769 GGTGTTCAGGGTCTTGCAGATGCCTTTCTTGCATTG-CGTCTGCCATTCGATTCTCCTGA 724827 Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351 ||| || | || | | |||||||| || || ||||| | ||| || || Sbjct 724828 AGCACGTCAACTAAACACCCAGATATTTGAAACGATCTATCATGGCGCACTCACTGCCTC 724887 Query 105352 TTCAGAG-TTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 | ||| ||| || || | | || ||||||| || | ||||||||||||| || Sbjct 724888 CTGTGAGCTTGCCAAAGAGCT--CGGAACATATGAGACGTACGAGGGTTCTCCAGTCTCG 724945 Query 105410 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTACGACTGGG- 105467 |||| | |||||| | || ||||||| || | ||| | | | || |||| Sbjct 724946 AAAGGCGAGCTTCAGTACGACATGTGGG-GCGTCACACCGTCGGATTTGTGGGATTGGGC 725004 Query 105468 AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 |||| | |||| |||| || | ||| |||| ||| |||||| |||| || | Sbjct 725005 CAGCT-TGAAGGCTGACATCGCCAAGCATGGTGTTCGCAACTCTCTCCTTGTGGCGCCTA 725063 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 |||| ||||| |||||| | || |||||||| || || || || || || || || || Sbjct 725064 TGCCGACAGCATCCACCTCCCAGATCTTGGGAAACAACGAGTGTTTCGAGCCATATACCT 725123 Query 105588 CGAACATCTA 105597 |||| ||||| Sbjct 725124 CGAATATCTA 725133 >seq9 Length=1292822 Score = 123 bits (136), Expect = 3e-23 Identities = 176/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || || || ||||| | || |||| || || | ||| ||||| | |||||| | Sbjct 486799 CTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAACTGGGCTCTTCGA 486858 Query 94774 TGG-TTTGATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| ||| |||| ||||| || ||||| | || || | || || || || Sbjct 486859 TGGATTTCGGACAAGGAGTCGACTT---TTGCTCAACGCCTTGTTGCCTTCGCAGCCGTC 486915 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 ||||| |||||||| ||||| |||||| || | | ||||||||||||||| || || Sbjct 486916 GAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAAGAAGCGTGGCCTG 486975 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 94950 |||||||||||| |||||| || ||||| ||||||||||||||||| || || ||| Sbjct 486976 ATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAGGGTCTGCATACAGAT 487035 Query 94951 TTTGC 94955 ||||| Sbjct 487036 TTTGC 487040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260508369600