Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq18 145 8e-30 seq9 111 2e-19 >seq18 Length=894979 Score = 145 bits (160), Expect = 8e-30 Identities = 483/746 (65%), Gaps = 4/746 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || | |||| ||||| || |||||| | | | | ||| || ||| || Sbjct 723770 ATGCGTGTTTCTGTGGGCATCCATGGCGACGACATCGAGAGGGCGATTGAAACTTACAAC 723829 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| |||||||| ||| || || || | || || ||||||||||||||||| Sbjct 723830 CTCATGTCCCAAAAGTTCTTCACACATGCTTCTCCTACGCTGTTCAACGCTGGTACACCG 723889 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||| || || ||||||||| | | ||||| || ||| || || |||||| Sbjct 723890 CAAGGACAGTTGGCGTCCTGCTTCCTCATCGATATGAAAGAGGACAGTATTGAAGGCATC 723949 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || ||||| |||||| ||||||||| | || ||||| || || || Sbjct 723950 TACGACACTCTCAAAATCTGTGCCATGATCTCCAAGAACGCTGGAGGTATTGGGCTCAAC 724009 Query 53435 TGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG-CCGATG 53492 | || | | || || | || | || || || || || ||| || | | Sbjct 724010 -GTTCACTGCATTCGCGCTACTGGTTCCTACATTGGTGGCACAAATGG-GTCATCCAACG 724067 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 || | |||||| | ||||||||||||||||| || || || ||| | || || || Sbjct 724068 GATTGACTCCTATGTTACGCGTCTTCAACAACACCGCTCGTTATGTCGATCAAGGCGGCA 724127 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| ||| | ||||| || || || ||||| ||||| |||||| | | || | Sbjct 724128 ACAAGCGTCCGGGTGCCTTCGCTATATATCTTGAGCCATGGCATGCCGACGTCTTTGACT 724187 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 || | || || || |||||| || | || || | || ||| || || || | Sbjct 724188 TTTTGGACCTTCGCAAGAATCACGGCAAGGAGGAAAGCCGGGCCCGAGATCTCTTCTATG 724247 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 |||| |||| || ||||| |||||| || || |||||| | || ||| || Sbjct 724248 CTCTCTGGACCCCAGACCTATTCATGAAACGTGTCGAGAAGAATCTTGACTGGACTCTCT 724307 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||||| || ||||| | ||| || ||||| ||||| | | | | Sbjct 724308 TCTGCCCTCACGAGGCTCCAGGCCTGGCAGATGTGTATGGTGACGAGTTCGAGGCACTTT 724367 Query 53793 ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGG 53852 | || |||| | ||||| ||| || ||||| | | | ||| Sbjct 724368 ACGAGAGATACGAGAAGGAAGGCCGTGGTCGGAAAGCTGTGAAGGCCCAGAAACTCTGGT 724427 Query 53853 ATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGG 53912 ||||||| || || ||| ||||| || |||||||||||| || |||||| || Sbjct 724428 ATGCAATTCTTGAGTCTCAGACAGAGACTGGGACGCCGTACATGCTTTATAAGGATGCGT 724487 Query 53913 TCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| | |||||||||||||||||| Sbjct 724488 GTAACAAAAAGAGCAACCAGAAGAAC 724513 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/143 (74%), Gaps = 8/143 (6%) Strand=Plus/Plus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA----CATCTTCATGGAGA 55841 ||||||||| ||||| | ||| ||||| ||||||||||| || |||| ||| |||| Sbjct 725344 TGCTGATCGGGGTGCATTCATTGACCAATCCCAGTCTCTAAATATTCATC-TCAAGGAG- 725401 Query 55842 ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGA 55901 ||| | ||| |||| | | ||| ||||| ||| |||||||| || | |||| Sbjct 725402 --CCTACCATGGGCAAGATCACCTCCATGCATTTTGCTGGGTGGAAACTTGGCTTGAAGA 725459 Query 55902 CGGGTATGTACTATCTGCGGACC 55924 |||| |||||||| ||||| ||| Sbjct 725460 CGGGAATGTACTACCTGCGTACC 725482 >seq9 Length=1292822 Score = 111 bits (122), Expect = 2e-19 Identities = 481/744 (65%), Gaps = 39/744 (5%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 |||| ||| ||||| || ||||| || || |||||||| || || | | ||||| || Sbjct 487335 CTTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATT 487276 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGC--C 74573 ||||| ||||||| || ||| | || ||||| || | |||| | || | Sbjct 487275 GTCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAA---GAGCAAC 487219 Query 74574 ATG-AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGAT 74632 | | || ||||| || ||||||| |||||| ||| |||| || | |||||||| Sbjct 487218 AAGTAGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAG 487159 Query 74633 GAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGAC 74692 | | ||||||||| || || |||| |||||| ||| | | || ||| | || Sbjct 487158 CAATGCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCC--TCGGTT 487101 Query 74693 AA----TCTTGTGAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCG 74745 | |||| | | | || || || || | | | | ||||| ||| | ||| | Sbjct 487100 ATGATGTCTTCT-ACCGCCTGCTTTGATGGTCTGTGGT---TTAGGTGGGAGAACAAGAG 487045 Query 74746 TCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAA 74805 || |||||| || |||| || || || | |||| |||||||| || | | Sbjct 487044 GCA-GGCAAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGA 486986 Query 74806 GGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGA 74865 | || ||||| || ||||||||||| | |||||||| | |||||| ||| |||| Sbjct 486985 GACCTGGCATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGA 486926 Query 74866 AGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCAT-------CG 74918 |||| || ||||| || ||||| ||||||||||| || || | | | || Sbjct 486925 AGATTCCCTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCG 486866 Query 74919 GAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATC 74978 || |||| || ||||||| | |||||| | || ||| | || || || Sbjct 486865 AAATCCATCGAA----GAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATG 486810 Query 74979 GCTTGGAAGAGG-CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGA 75037 || | ||| ||| ||| ||| | || || ||||||| | | ||||||||| | Sbjct 486809 GCGTCGAACAGGTATTGTCTT-TGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACT 486751 Query 75038 GTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACG-CGTAGAAAGACCGCGCCT 75096 |||| ||||||| ||||| ||| | | || | | | | | ||||| |||| |||| Sbjct 486750 GTACATCTCCGAGTGAATGTTCTCCAT-CATGATTTGAAAGCCATAGAAGCACCGAGCCT 486692 Query 75097 CTGCAATCTGTACATCCTTTGAAAA--ATTCATGTCGATATTCTCCATGACGATGCCGTC 75154 | | || || || || |||||| ||| | ||| ||| || |||| ||||| || Sbjct 486691 CGGGTATTTGGACTTCGCCTGAAAATCGTTC--GACGAGATTTTCATTGACAATGCCATC 486634 Query 75155 CGAGGCGGCGAAAAAAGCCAGTAC 75178 ||| || || || || || || Sbjct 486633 ACTGGCAGCAAAGAAGGCAAGGAC 486610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215726392000