Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 167 3e-36 seq18 118 1e-21 seq5 104 3e-17 seq14 89.7 6e-13 >seq9 Length=1292822 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || || ||||| || ||||| ||||| ||||| ||| | || | Sbjct 437115 GTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACACTATCGAC 437056 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| |||||||||||||||||||| ||||| || || ||||| || || || Sbjct 437055 AATGTAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAACGACTTATC 436996 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || |||||||| |||||||| |||| || |||||| | ||||| || |||| || ||| Sbjct 436995 TTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATCCAGAAAGAA 436936 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| || ||| | |||||||| ||||| Sbjct 436935 TCTACTCTTCACCTCGTCCTCCGTCTTCGTGGTGG 436901 Score = 149 bits (164), Expect = 7e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||| ||||| ||||| |||||| || | ||| ||||| Sbjct 437387 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGTGATACTATCGATAATGTGAAGA 437328 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || ||||||||||||||||| ||||| || || ||||||||||| || || || || | Sbjct 437327 GCAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGCA 437268 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 | || ||||| || | ||||||||| | ||||| || |||| ||||| || || |||| Sbjct 437267 AACAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTTC 437208 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || | ||||| || || || Sbjct 437207 ACTTGGTTCTTCGTCTCCGTGGAGG 437183 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||| || || | || ||||| || Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || || ||||| ||||| || ||||||||||| ||| Sbjct 436839 GACACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 436780 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || ||||||| ||| || || | ||||| || Sbjct 436779 CAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAAC 436720 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || || ||||| || || | || || ||||| Sbjct 436719 ATTCAGAAAGAATCTACACTACATCTTGTTCTGAGACTGCGAGGTGG 436673 Score = 125 bits (138), Expect = 8e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 64701 GTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGG 64760 |||| | |||| ||| || || | || || || || || ||||| ||||||||||| Sbjct 486876 GTCGACTTTTGCTCAACGCCTTGTTGCCTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGG 486935 Query 64761 GTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTC 64820 || ||| ||| | || ||||| || ||||| ||||||||||||||||| | || || Sbjct 486936 CTCCTTCGCATCTGTCTTTTGGCTCAAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTC 486995 Query 64821 GAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAG 64880 ||| |||||||||||||| |||||||| || || ||| ||||| | ||||| Sbjct 486996 GAATGAGCTGATCTCTCGTGACGAGGGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTC 487055 Query 64881 CCACCTCAAGGACAAACCATCA 64902 |||||| || ||| ||||||| Sbjct 487056 CCACCTAAACCACAGACCATCA 487077 Score = 102 bits (112), Expect = 9e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || || || || || || || || || || || | Sbjct 436671 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGA--AAGCT 436614 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| || | ||| ||||| || || || ||||| ||||| ||||| ||||| | Sbjct 436613 CGGATACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATC 436554 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | ||||| || || ||||| || ||||| | || |||| ||| || | | || |||| Sbjct 436553 AACAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATA 436494 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || || |||| | ||||| || ||| | || || ||||| Sbjct 436493 ACATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGG 436445 >seq18 Length=894979 Score = 118 bits (130), Expect = 1e-21 Identities = 697/1097 (64%), Gaps = 36/1097 (3%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414 || ||||| || ||| |||||| ||| || | || | || || ||||| || ||| Sbjct 725160 AATTCTCCAGCCAGGACGCGACG-AGAGTAGATATTCGAGGTATATGGCTCGAAACACTC 725102 Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474 ||||||||| | |||||| | ||| || |||||||| || | || | || || || Sbjct 725101 GTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAGTT 725042 Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA--ACCCCAACG 80532 || | || ||||| ||| || | ||| ||| || || || | || ||| Sbjct 725041 GCGAACACCATGCTTGGCGATGTCAGCCTTCAAG-CTGGCCCAATCCCACAAATCCGACG 724983 Query 80533 CTGTGAC--CCCACATGTCGTGCTGCAAGAT-GCCCTCCGACGCCGGAGACCCCGCGAAC 80589 |||||| |||||||||||| ||| ||| | ||| | ||| | ||||| ||| || || Sbjct 724982 GTGTGACGCCCCACATGTCGTACTG-AAGCTCGCCTTTCGAGACTGGAGAACCCTCGTAC 724924 Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAA 80649 ||||| || | || | ||||| |||||||| || | | || || | ||||| Sbjct 724923 GTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCATGATAG 724864 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 || ||||| | |||| | || || | || ||||| | || | | Sbjct 724863 ATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCAGACGC 724804 Query 80710 ATCAT-CATGAACA-CGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767 | || || ||| | || || || |||||||| || | | || || | || || Sbjct 724803 A--ATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTCGGA 724746 Query 80768 TGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 || ||| |||||| | ||| ||| | | |||||||| | |||||||| Sbjct 724745 AATTGCTTCGGCGTGCCTCCTCGACTGGATAATGGCTGCGTTCGATGACTCTGTTCAGGT 724686 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCC--CCT- 80884 ||||||| || ||| | || || || || ||||||| | | | | || Sbjct 724685 TGCGTGTCACGACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGCCTCGACCAG 724626 Query 80885 --TCA-CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 ||| || | | ||||| || || ||||||||||| || || ||||| || | Sbjct 724625 AATCAACATAAGTGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGACCTCATCTGGTG 724566 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTT 80999 | | | || || || || ||||| | ||| || ||| || || || ||||| || Sbjct 724565 CGCTGTATTCAACAATCTCAGTGCAGAGATTGGAG--CTTCGGATAGTCCCAAGGTTCTT 724508 Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059 |||||| ||| ||| || || ||||| || ||||||||| || || ||||| Sbjct 724507 CTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCCAGTCTCTGT 724448 Query 81060 CTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCC 81119 ||| |||| || || || | ||| | | | ||||| || | || || ||| Sbjct 724447 CTGAGACTCAAGAATTGCATACCAGAGTTTCTGGGCCTTCACAGCTTTCCGACCACGGCC 724388 Query 81120 TTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTC 81179 ||| | | || | ||||| | | ||||||| | |||| | | || | ||| | Sbjct 724387 TTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACACATCTGCCAGGCC 724328 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 ||| ||||| |||||| | || |||||| | ||||| ||| |||||||| Sbjct 724327 TGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGACACGTTTCATGAA 724268 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCT--CCTCATCACCC 81297 ||| ||| ||||||| || ||| || || ||| || || || |||| | || Sbjct 724267 TAGGTCTGGGGTCCAGAGAGCATAGAAGAGATCTCGG--GCCCGGCTTTCCTCCTTGCCG 724210 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 || || ||| | || | |||||| | || ||| |||||||||||||| ||||| | Sbjct 724209 TGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCTCAAGATATATA 724150 Query 81358 GCGATCG-ACCC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTA 81411 |||| | |||| |||| ||| || || | ||| ||||| || || ||| Sbjct 724149 GCGAAGGCACCCGGACGCTTG---TTGCCGCCTTGATCGACATAACGAGCGGTGTTGTTG 724093 Query 81412 AATACACGCAACATAGG 81428 || || || |||||||| Sbjct 724092 AAGACGCGTAACATAGG 724076 >seq5 Length=1929936 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| || || || | || Sbjct 1366240 CTTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAAT 1366299 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || || | ||| || || || ||||| ||||| || || ||||||||||| || || Sbjct 1366300 TGACAACGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCT 1366359 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || || |||||||| |||| || ||||| ||||||| ||| |||| || Sbjct 1366360 GATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAA 1366419 >seq14 Length=1110587 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||||| |||||||||| || || || || || ||||| || || || || || ||||||| Sbjct 440849 TTCAG-ACAAGGAGGGCATCCCACCCGATCAACAGCGACTGATCTTCGCCGGCAAGCAAC 440907 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 |||| || | || || || | ||||| ||| |||| |||||||| || || ||||| | Sbjct 440908 TCGAAGACGGCCGGACTCTCTCCGACTACAATATCCAGAAGGAATCAACCCTCCATCTCG 440967 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 | | || || ||||| || Sbjct 440968 TGCTCCGACTCCGCGGCGG 440986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310114844800