Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02]
40 sequences; 37,173,200 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq9 122 8e-23
seq5 89.7 4e-13
seq14 86.0 5e-12
>seq9
Length=1292822
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || ||||||||||| | || || | ||||| ||| |||||
Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || |||||||| || || |||||
Sbjct 436839 GACACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 436780
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||||||||| || |||| || || || | ||||| ||||||
Sbjct 436779 CAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAAC 436720
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || || || || ||||| | ||| || | |||| ||||||||
Sbjct 436719 ATTCAGAAAGAATCTACACTACATCTTGTTCTGAGACTGCGAGGTGGCAT 436670
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||| || || | || || || ||||||||| ||
Sbjct 436672 CATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTC 436613
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | || || | || || || || ||||||||||| || || || || |||||
Sbjct 436612 GGATACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 436553
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||||| || |||||||| || ||| | || ||||| ||
Sbjct 436552 ACAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAA 436493
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216
||| || || ||| || || ||| | || ||| | |||| |||||||
Sbjct 436492 CATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGGCA 436443
Score = 98.7 bits (108), Expect = 9e-16
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC---GACTCGATTGAGATGGTCAAA 27068
||||||||| | || ||||| || || || |||| || | || || | || ||
Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGA---GTCCAGTGATACTATCGATAATGTGAAG 437329
Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128
|| ||||| ||||| || || || || || ||||| |||||| | || | |||||||
Sbjct 437328 AGCAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGC 437269
Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188
||||| | |||||| | ||| | ||||| |||||||| || |||||||| || |
Sbjct 437268 AAACAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTT 437209
Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||| | ||| | || || |||||
Sbjct 437208 CACTTGGTTCTTCGTCTCCGTGGAGGCAT 437180
>seq5
Length=1929936
Score = 89.7 bits (98), Expect = 4e-13
Identities = 131/184 (71%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || || || || || |||||| | || || || || || ||| | |||||| | |||
Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || ||||||||||| ||||| ||||| || || || || |
Sbjct 1366301 GACAACGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCTG 1366360
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCA-AAA 27175
|| | ||||||||||||| | ||||| | ||| | || || ||||| || || |||
Sbjct 1366361 ATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAAA 1366420
Query 27176 GGAG 27179
| ||
Sbjct 1366421 GTAG 1366424
>seq14
Length=1110587
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139
|||||| || ||||| ||||||||||||||||| | || | ||||||||| ||| | ||
Sbjct 440852 AGACAAGGAGGGCATCCCACCCGATCAACAGCGACTGATCTTCGCCGGCAAGCAACTCGA 440911
Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|||| | ||| | ||||| ||||| || || ||||| || ||| | |||
Sbjct 440912 AGACGGCCGGACTCTCTCCGACTACAATATCCAGAAGGAATCAACCCTCCAT 440963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918182540800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |