Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 122 8e-23 seq5 89.7 4e-13 seq14 86.0 5e-12 >seq9 Length=1292822 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||||||||| | || || | ||||| ||| ||||| Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || |||||||| || || ||||| Sbjct 436839 GACACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 436780 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| || |||| || || || | ||||| |||||| Sbjct 436779 CAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAAC 436720 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || ||||| | ||| || | |||| |||||||| Sbjct 436719 ATTCAGAAAGAATCTACACTACATCTTGTTCTGAGACTGCGAGGTGGCAT 436670 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || || | || || || ||||||||| || Sbjct 436672 CATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTC 436613 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || || || ||||||||||| || || || || ||||| Sbjct 436612 GGATACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 436553 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || |||||||| || ||| | || ||||| || Sbjct 436552 ACAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAA 436493 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || || ||| || || ||| | || ||| | |||| ||||||| Sbjct 436492 CATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGGCA 436443 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC---GACTCGATTGAGATGGTCAAA 27068 ||||||||| | || ||||| || || || |||| || | || || | || || Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGA---GTCCAGTGATACTATCGATAATGTGAAG 437329 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || ||||| ||||| || || || || || ||||| |||||| | || | ||||||| Sbjct 437328 AGCAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGC 437269 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 ||||| | |||||| | ||| | ||||| |||||||| || |||||||| || | Sbjct 437268 AAACAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTT 437209 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||| | ||| | || || ||||| Sbjct 437208 CACTTGGTTCTTCGTCTCCGTGGAGGCAT 437180 >seq5 Length=1929936 Score = 89.7 bits (98), Expect = 4e-13 Identities = 131/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || |||||| | || || || || || ||| | |||||| | ||| Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || ||||||||||| ||||| ||||| || || || || | Sbjct 1366301 GACAACGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCTG 1366360 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCA-AAA 27175 || | ||||||||||||| | ||||| | ||| | || || ||||| || || ||| Sbjct 1366361 ATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAAA 1366420 Query 27176 GGAG 27179 | || Sbjct 1366421 GTAG 1366424 >seq14 Length=1110587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || ||||| ||||||||||||||||| | || | ||||||||| ||| | || Sbjct 440852 AGACAAGGAGGGCATCCCACCCGATCAACAGCGACTGATCTTCGCCGGCAAGCAACTCGA 440911 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 |||| | ||| | ||||| ||||| || || ||||| || ||| | ||| Sbjct 440912 AGACGGCCGGACTCTCTCCGACTACAATATCCAGAAGGAATCAACCCTCCAT 440963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918182540800