Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9 167 5e-36 seq18 113 1e-19 >seq9 Length=1292822 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | || || || | |||| |||||| |||||||||||||||| | || Sbjct 436450 ACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGT 436509 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||||| ||||||||| || ||||| ||||| ||||| || || |||| || Sbjct 436510 CCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACC 436569 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| |||||||| ||||| || ||||| || || |||||||| || ||||| Sbjct 436570 CTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCACTTCGAG 436629 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| ||||| | |||||| Sbjct 436630 TGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||||||||| || ||||| |||||||| || || | ||||| Sbjct 436906 ACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGT 436965 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || ||||||||||| ||||| || || || |||| || Sbjct 436966 TCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACC 437025 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| || || || || || ||||| |||||||| || ||||| || Sbjct 437026 CTCCTTGTCCTGAATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAG 437085 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || || |||||||| || Sbjct 437086 AGTGATGGTCTTCCCAGTCAGAGTCTTGAC 437115 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| || ||||| || || || || ||||| || ||||| || || | || || Sbjct 436679 CGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTG 436738 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||||||||||||| |||||||| | ||| || || || ||||||| ||| Sbjct 436739 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCT 436798 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||||||||| ||||| || ||||||||||| || |||||| || | Sbjct 436799 TCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAG 436858 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| || || | ||||| Sbjct 436859 GTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| || ||||| || |||||||| || || | || Sbjct 437185 TCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAG 437244 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || ||||| ||||| ||||| ||||||||||| || || || || || |||| Sbjct 437245 GGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAAT 437304 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| ||||| || ||||| || ||| | || ||||| Sbjct 437305 ACCCTCCTTGTCCTGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGACCTC 437364 Query 211070 GAGAGTGATCGTCTTTCCCGT 211090 ||||||||| ||||| || || Sbjct 437365 GAGAGTGATGGTCTTGCCGGT 437385 >seq18 Length=894979 Score = 113 bits (124), Expect = 1e-19 Identities = 201/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 |||| |||||| |||||||||||| || | ||||| || || ||| | ||| | Sbjct 724518 CCAAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTC 724459 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||| | |||| | | ||||| || ||| || | |||||| |||| |||| Sbjct 724458 CCAGTCTCTGTCTGAGACTCAAGAATTGCATACCAGAGTTTCTGGGCCTTCACAG-CTTT 724400 Query 178208 TTGGCTTTT-CCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGAC 178266 | | ||||| |||||||| | | ||| || ||||||| || ||||| || Sbjct 724399 CCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACAC 724340 Query 178267 ATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCAC 178326 ||| | || || |||||||| | |||||||||||| |||| | | | | || || Sbjct 724339 ATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGAC 724280 Query 178327 TCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGC 178377 ||||||||||| ||||| | |||||||| |||||||| | |||| ||| Sbjct 724279 ACGTTTCATGAATAGGTCTGGGGTCCAGAGAGCATAGAAGAGATCTCGGGC 724229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151405934600