Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02]
40 sequences; 37,173,200 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq9 107 1e-18
>seq9
Length=1292822
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | || || ||||| ||||| |||||||| || | ||
Sbjct 436671 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTCG 436612
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | |||||||| ||| | || ||||||||
Sbjct 436611 GATACAATCGATAATGTGAAGAGCAAGA-TCCAAGACAAAGAGGGTATTCCCCCAGATCA 436553
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||||||||| || ||||||| | || || || ||||| ||
Sbjct 436552 ACAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAA 436493
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || |||||| ||| || ||| | || || || |||| || ||
Sbjct 436492 CATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGG 436445
Score = 96.9 bits (106), Expect = 2e-15
Identities = 135/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693
|| || || || ||||||||||| || || |||| || ||| | || ||| | || |
Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGTGATACTATCGATAATGTGAAGAGC 437326
Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753
|| | || ||||| || ||| | || || ||||| |||||| | || || ||||||||
Sbjct 437325 AAGA-TTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGCAA 437267
Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813
||| || ||||||| || || || ||| |||||||| || || ||||| ||| | ||
Sbjct 437266 ACAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTTCA 437207
Query 23814 TTTAGTT 23820
|| |||
Sbjct 437206 CTTGGTT 437200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009435220320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |