Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 165 2e-35 seq5 114 3e-20 >seq9 Length=1292822 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||||||| ||||| || || || |||||||| || | ||||| |||| || || Sbjct 436679 CGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTG 436738 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| | || || || || || ||||| ||| Sbjct 436739 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCT 436798 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || |||||||| ||||||| ||||||||||| || | ||| || ||||| Sbjct 436799 TCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAG 436858 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | |||||| Sbjct 436859 GTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| ||||| |||||||| |||| ||||| |||| | || Sbjct 436906 ACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGT 436965 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || || |||||||||||||||||||| || || || |||||||| Sbjct 436966 TCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACC 437025 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || || ||| ||| ||||| ||||| || | || || || | Sbjct 437026 CTCCTTGTCCTGAATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAG 437085 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || |||| ||| || Sbjct 437086 AGTGATGGTCTTCCCAGTCAGAGTCTT 437112 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || || || | |||| ||||| |||| || ||||| | ||| || Sbjct 436450 ACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGT 436509 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || || ||||| || || ||||| || || |||||||| Sbjct 436510 CCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACC 436569 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| ||||||| ||||| || || ||| ||||||| || | Sbjct 436570 CTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCACTTCGAG 436629 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || ||||| || || Sbjct 436630 TGTGATGGTTTTCCCTGTCAAGGTCTT 436656 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| | || | || ||| Sbjct 437198 AGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCT 437257 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||||||||| || || || || || |||||||| |||||||| Sbjct 437258 TCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 437317 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||| || || || || || || | ||||| ||| Sbjct 437318 TGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGACCTCGAGAGTGATGGTC 437377 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 437378 TTGCCGGT 437385 >seq5 Length=1929936 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| |||||| || | || || | |||||||| || || || || ||||||| Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || ||||| ||||| || || || || || |||||||||||||| ||| || | Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGT 1366302 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || ||||| |||| ||| || || | |||||| ||||||||||| Sbjct 1366301 CAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGT 1366256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530588827760