Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9 219 4e-52 >seq9 Length=1292822 Score = 219 bits (242), Expect = 4e-52 Identities = 572/860 (67%), Gaps = 27/860 (3%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| ||||| || || || ||||| |||||||| || |||||||| | | Sbjct 487343 ACACCAGCCTTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGA 487284 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAA----TGTTTTTCACACTT 4363 || ||||| ||||| || || || ||||| || | |||||| |||| || || Sbjct 487283 GAGATATTGTCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCA--- 487227 Query 4364 TAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGA-GTTCGCAGT 4422 ||||| ||||| | || ||||| |||||||| || || || |||| | | ||| ||| Sbjct 487226 -AGAGCAACAAGTAGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCG-AGT 487169 Query 4423 TAATTCCAATTAAT-CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 | || || | ||| | ||| || || || | || | ||||||||| || || || Sbjct 487168 TCATGCCGAGCAATGCGCAC-GGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACT 487110 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 || || || || || |||| || | || |||||| | | || || ||| Sbjct 487109 GCCTCGGTTATGATGTCTTCTACCGCCTGCTTTGATGGTCTGTGGTTTAGGTGGGAGAAC 487050 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 || | || |||||||| ||||| ||| ||||| | ||||| || || || || Sbjct 487049 AAGAGGCAGGCAAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAG 486990 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 || | || ||||| | || | ||| || |||||||| | || || || || |||||| Sbjct 486989 GTGAGACCTGGCATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAA 486930 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG-GGACCCGAA--CGAGCTGGCT 4718 ||||| || || || ||||| || || || || | || || | || ||| || | Sbjct 486929 AAGAAGATTCCCTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGA-CT--CC 486873 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 ||||| ||||||| | |||||||| |||||||| | ||| ||||| |||| Sbjct 486872 TTGTCCGAAATCCATCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCA 486813 Query 4779 ATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 || |||| || | ||| |||| || ||| || | || || ||||| || | Sbjct 486812 ATGGCGTCGAACAGGTATTGTCTTTGTT---TTGGCTCCTTGATGTACGTGTCAATCAAC 486756 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 | || ||||| || || || || || || || || ||||| || || ||||| | | Sbjct 486755 AAACTGTACATCTCCGAGTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGA 486696 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 || || | || ||| |||||| |||||| ||| || | ||||| || || || || Sbjct 486695 GCCTCGGGTATTTGGACTTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCA 486636 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT---A 5012 |||||||| ||||| || || | || || || | ||||| ||||||| || | Sbjct 486635 TCACTGGCAGCAAAGAAGGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGA 486576 Query 5013 AGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGAC 5072 ||| |||||| | |||||| | | || |||||||| | ||||| || || Sbjct 486575 CGTTCACTCCAGTCATGTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAA 486516 Query 5073 GCTTCCGCTTTTTTGTACAT 5092 ||||| ||||| || ||||| Sbjct 486515 GCTTCGGCTTTCTTATACAT 486496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049391813320