Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9 167 5e-36 seq5 150 4e-31 seq24 84.2 5e-11 >seq9 Length=1292822 Score = 167 bits (184), Expect = 5e-36 Identities = 176/228 (77%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || |||||| |||||||||||||| | Sbjct 436900 ACCACCACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGA 436959 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || |||||||| || || ||||| | ||||| || || || Sbjct 436960 TAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGG 437019 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || || |||||| ||||| | ||||||||||| || | |||| Sbjct 437020 AATACCCTCCTTGTCCTGAAT-TTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGA 437078 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 | || |||||||| ||||| || |||| |||||| |||| ||| |||| Sbjct 437079 CCTCCAGAGTGATGGTCTTCCCAGTCAGAGTCTTGACGACTAT-TGCA 437125 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| | | || ||||| || ||||| ||||| |||||||| || || | Sbjct 436445 CCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGAC 436504 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || | || || ||||||||||| | || ||||| || ||| Sbjct 436505 AATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGA 436564 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| |||||||||||| ||||| || || ||||||| || ||||| ||| || Sbjct 436565 ATACCCTCTTTGTCTTGGATC-TTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCAC 436623 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||| || || || ||||| ||||| || || |||||||| Sbjct 436624 TTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| | || || ||||||| || |||||| || ||||||||||| | Sbjct 436673 CCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGAC 436732 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || ||||| |||||||| || || || || ||| Sbjct 436733 AGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGA 436792 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| || |||||| ||||| || || ||||||| ||||| || | ||| || Sbjct 436793 ATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTATCGATGGTGTCGGACGATTCAAC 436851 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 436852 TTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 122 bits (134), Expect = 2e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| || | || || || |||||||||||||| | Sbjct 437183 CCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGAT 437242 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || || ||||| ||||| ||||| | ||| || || || ||| Sbjct 437243 AGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGA 437302 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||| ||||| || || |||||||||| || | ||||| Sbjct 437303 ATACCCTCCTTGTCCTGAATC-TTGCTCTTCACATTATCGATAGTATCACTGGACTCGAC 437361 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||| ||||| || || Sbjct 437362 CTCGAGAGTGATGGTCTTGCCGGT 437385 >seq5 Length=1929936 Score = 150 bits (166), Expect = 4e-31 Identities = 144/182 (79%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| ||||| |||||||| | || ||||||||||| || |||||||| ||||| |||| Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTA 283028 ||| ||||| ||||| || || ||||| |||||||||||| ||||| || ||| | Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATC-TTGCTCTTGACGTTG 1366303 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | |||||| ||||| ||||| ||||| ||||| | ||||| ||| Sbjct 1366302 TCAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACG 1366243 Query 283089 AA 283090 || Sbjct 1366242 AA 1366241 >seq24 Length=472671 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 316710 CAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAG 316769 |||||| || |||||| | ||||| | ||| |||||| ||||||||||||||||| Sbjct 285203 CAGATACTCTTGCAGCCACTTGACATTTGCCACGTCAAGATGATTGGTCGGTTCGTCAAG 285144 Query 316770 TAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCC 316829 ||||| | | ||| ||| || |||||| | || | ||||||||||| ||||| || Sbjct 285143 AAGTAGAACGTCAGCGCCCATCAACATAGCTCTAGCTAAGGCAAGCTTCATCTTCCAACC 285084 Query 316830 CCCGGAAAG 316838 || || || Sbjct 285083 ACCAGAGAG 285075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738663546160