Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 145 2e-29 seq5 138 3e-27 seq18 102 2e-16 seq14 93.3 1e-13 >seq9 Length=1292822 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||| | || || ||| || ||| Sbjct 436896 CAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCCGAC 436837 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 436836 ACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAGCAG 436777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || ||||| | || || |||| || ||| | Sbjct 436776 CGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAACATT 436717 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| ||||| ||||||||| ||||||| Sbjct 436716 CAGAAAGAATCTACACTACATCTTGTTCTGAGACT 436682 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||||| || || || || ||||| || ||||| || || ||||| |||| Sbjct 437117 TCGTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACACTATCG 437058 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || || ||||||||||| || || || || ||||| ||||||||||||| Sbjct 437057 ACAATGTAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAACGACTTA 436998 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || ||||| ||||||||||| | || || |||| || ||| |||| |||| Sbjct 436997 TCTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATCCAGAAAG 436938 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || || || Sbjct 436937 AATCTACTCTTCACCTCGT 436919 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | ||||| ||||| ||||| ||||| ||||||||||| || Sbjct 436668 CAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTCGGAT 436609 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| || |||||||| || || || || || || || Sbjct 436608 ACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 436549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||| | |||||||| |||| | | ||||||||| || Sbjct 436548 CGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAACATC 436489 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| || ||||||| || |||||||| Sbjct 436488 CAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACT 436454 Score = 127 bits (140), Expect = 5e-24 Identities = 141/187 (75%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| |||||||| || | || || ||||| || || || Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGTGATACTATCGATAATGTGAAGAGC 437326 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || || ||||| ||||| || |||||||||||||| ||| Sbjct 437325 AAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGCAAA 437266 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||| || | || || |||| || ||| |||| || || |||||||| || Sbjct 437265 CAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTTCA- 437207 Query 178125 CTTGTTT 178131 |||| || Sbjct 437206 CTTGGTT 437200 >seq5 Length=1929936 Score = 138 bits (152), Expect = 3e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || ||||| |||||||| ||| ||| ||||| || Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| || |||||||| || ||||| || ||||||||||| || Sbjct 1366301 GACAACGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCTG 1366360 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| ||||| ||||||||||| | || || | || || || |||| ||| Sbjct 1366361 ATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAAA 1366420 Query 178110 G 178110 | Sbjct 1366421 G 1366421 >seq18 Length=894979 Score = 102 bits (112), Expect = 2e-16 Identities = 200/293 (68%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 214121 TCCCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCA 214180 |||||| ||| ||||||||||| || | | ||||| || || ||| | ||| Sbjct 724520 TCCCAAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCG 724461 Query 214181 TTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCT 214240 | || ||| |||| ||||||| || |||||||| ||||||||||| | || Sbjct 724460 TCCCAGTCTCTGTCTGAGACTCAAGAATTGCATACCAGAGTTTCTGGGCCTTCAC-AGCT 724402 Query 214241 TTTTG-GCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAG 214299 || | | | || || || ||||| | || ||||| | ||| || || ||| || Sbjct 724401 TTCCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATAC 724342 Query 214300 ACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTG 214359 ||||| | || || |||||||||| |||||||| ||| |||| | ||| | | | Sbjct 724341 ACATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCG 724282 Query 214360 ACTCTTTTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAAAATCTCTCTGGC 214412 || | ||||||||| ||||| | ||||||| ||||| || | |||| ||| Sbjct 724281 ACACGTTTCATGAATAGGTCTGGGGTCCAGAGAGCATAGAAGAGATCTCGGGC 724229 >seq14 Length=1110587 Score = 93.3 bits (102), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 ||||| |||| || || ||||| || || || || ||||| ||||||||||| || || | Sbjct 440849 TTCAG-ACAAGGAGGGCATCCCACCCGATCAACAGCGACTGATCTTCGCCGGCAAGCAAC 440907 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || ||||||| |||| || || |||| || |||||||| || ||||| | Sbjct 440908 TCGAAGACGGCCGGACTCTCTCCGACTACAATATCCAGAAGGAATCAACCCTCCATCTCG 440967 Query 178129 T 178129 | Sbjct 440968 T 440968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730583087760