Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq9 111 1e-19 seq5 95.1 1e-14 >seq14 Length=1110587 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | ||| ||||| || || |||||||| || || ||||||||| Sbjct 440986 CCGCCGCGGAGTCGGAGCACGAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGGAG 440927 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||| |||||||||||||| ||||| |||||||| || | || Sbjct 440926 AGAGTCCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGTTGATCGGGTGGG 440867 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 440866 ATGCCCTCCTTGTC 440853 >seq9 Length=1292822 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 437182 GCCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGA 437241 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| |||||||| ||||||||||| || || ||||| || |||| ||| Sbjct 437242 TAGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGG 437301 Query 41755 AACGCTCTCCTTGTCC 41770 || | |||||||||| Sbjct 437302 AATACCCTCCTTGTCC 437317 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || || ||||||||||| |||||||| || ||||| | || || Sbjct 436691 ACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCATCCTCC 436750 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| |||| |||||| || || | |||| || ||||| ||| | Sbjct 436751 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 436810 Query 41774 ATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || ||||| | | || | |||||| ||| || || || | || || || | Sbjct 436811 ATCTTGCTCTTCACATTATCG--ATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCT 436868 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||| ||||| ||||| || ||||| Sbjct 436869 TGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | ||||| ||||||| |||||||| ||||| |||||||| || || Sbjct 436444 GCCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGA 436503 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || | |||||||||||| || || ||||||||||| || | ||| Sbjct 436504 CAATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGG 436563 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 || | ||| ||||| ||| || ||||| | | | ||| | ||| || Sbjct 436564 AATACCCTCTTTGTCTTGGATCTTGCTCTTCA--CATTATCGATTGTATC-CGAGCTTTC 436620 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| || | || || ||||| || |||| ||||| || || ||||||||| Sbjct 436621 CACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCATG 436672 >seq5 Length=1929936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| || || ||||| || |||||||| | || ||||| || ||||||||||| ||| Sbjct 1366419 TTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGATC 1366360 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 ||||| || ||||| | || | || ||| ||||| ||| || ||| ||| | | Sbjct 1366359 AGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTT-GACGTTGTC 1366301 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||||| || || ||||| | ||| || || || ||||| || ||||| ||||| Sbjct 1366300 AATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGAA 1366241 Query 41854 AATCTG--CATGTTA 41866 | || ||||||| Sbjct 1366240 GCTGTGATCATGTTA 1366226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303768848000