Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq53 161 1e-34 seq76 86.0 7e-12 >seq53 Length=118516 Score = 161 bits (178), Expect = 1e-34 Identities = 554/852 (65%), Gaps = 14/852 (2%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| ||||| |||||||| |||||||| || || || || | | || || || Sbjct 89753 TTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATGTTC 89812 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT--CAGAAA 23961 |||||||| ||| | || |||||| || || | ||| | | |||| || || Sbjct 89813 TCCATGAAGTCGAAGGGGTTGGTAGCACGGTACAC-CTTGTCGTTGCCAAGGGCCACTAA 89871 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA-TA 24020 | | || || || ||||| ||||| ||||||| ||| ||||| || | || Sbjct 89872 GAGA-CGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATGCCGAGTA 89930 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 | | ||||||||| |||| || || || | ||||| ||| ||||| || || Sbjct 89931 AACCGCAA-GGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCGTCGGTGATG 89989 Query 24081 ATA-GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 || | || ||| ||| | || || | | || |||| || || || Sbjct 89990 ATTTGCTCGACAAGTTCCTTGCCAGGGCGGTTGTTC-AGGTGGGAGAACAACAGGCAGGC 90048 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || || ||| |||||||| || | | ||| | ||||| ||||| || || ||||| Sbjct 90049 AAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCGGG 90108 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| || |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 90109 CATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCAGAAAAGAAGATGCC 90168 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCA 24316 ||| || || ||||| || || || | | || || | | ||||| ||||| Sbjct 90169 TTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTCTCTGTCGCAGATCCA 90228 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||| ||||||| ||||| || || || || || || || ||||| || || || Sbjct 90229 CTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCAATAGCGTTGAACAG 90288 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 || | | | || |||| || ||||| ||||| | | || | || || Sbjct 90289 GTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAAGAGTAGGTCTCGGA 90348 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496 || ||||| || || || || || || ||||| || | |||||| | ||||| || Sbjct 90349 GTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCAGGGATCTGGAC 90408 Query 24497 TTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 || | | || || || | | || || || ||||| || ||| ||| ||||| || Sbjct 90409 CTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCAGAGGCAGCAAAGAA 90468 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTTAGTTTATTCCAATCATT 24613 |||| | || || || || | ||||| |||| | || ||||| || | Sbjct 90469 GGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGGTTGTTCCAGTCGTG 90528 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 || |||||| |||| ||| | || || | ||||| || || ||||| ||||| || || Sbjct 90529 GAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTA 90588 Query 24674 CATATTCCAGAT 24685 ||| | |||||| Sbjct 90589 CATCTGCCAGAT 90600 >seq76 Length=103561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 52796 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 52855 |||| ||| | ||||| || |||||||||| |||| | ||||| ||||||||||| Sbjct 3903 TCCTGGTCAACAGTGAACTGGATGGGAGCGGCGGCGGCCTGGGTACGCAGATAGTACATG 3844 Query 52856 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTC 52915 || || || ||||| || |||| || ||| ||||| || || | |||| | Sbjct 3843 CCAGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATGCTGGTGATTTTGCCCATGGTA 3784 Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 |||||| || ||||| |||| || || ||||||||||| || || | || || Sbjct 3783 GGATCTTTCATGTGGATGTTCAGCGACTGCGACTGATCGATGAAAGCGCCACGATCGGCG 3724 Query 52976 GCCATTT 52982 ||||||| Sbjct 3723 GCCATTT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715076483920