Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq53 233 2e-56 seq249 125 7e-24 seq404 109 6e-19 seq133 96.9 4e-15 >seq53 Length=118516 Score = 233 bits (258), Expect = 2e-56 Identities = 494/729 (68%), Gaps = 15/729 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| | || || Sbjct 90600 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCTGAGGAGATTGATCTA 90541 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||||| || | | | ||||||| | || | | | | |||||| | |||||| Sbjct 90540 TCCAAAGATCTCCA-CGACTGGAACAACCGGCTTACCAAGGACGAGCAGTACTTCATCTC 90482 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | |||||||| || || ||| || ||||| ||||||||||| ||||| ||||| Sbjct 90481 TCACATTCTGGCCTTCTTTGCTGCCTCTGATGGCATAGTCAACGAGAACCTGGTTGAGCG 90422 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| || ||||| ||| | | ||||| || |||||||| || || |||||| || Sbjct 90421 TTTCTCTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTATGGTTTCCAGATCATGAT 90362 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || | ||||| || ||| | | || || Sbjct 90361 GGAGAACATCCACTCCGAGACCTACTCTTTGTTGATCGATACTTACATTAAGGAGC-CTG 90303 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | | || |||| ||||| || || || || || ||| | || | Sbjct 90302 CCCAGCGCACGTACC---TGTTCAACGCTATTGACACCATTCCCTGCATACGCCGCAAAG 90246 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| || |||||| || |||||| | | || | ||||||| | | Sbjct 90245 CCGACTGGGCTCTCAAGTGGATCTGCGACAGAGAATCAACTTTTGCTCAGCGCCTAATCG 90186 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | || || || ||||| ||| |||||||||| || || ||| |||| |||||||| Sbjct 90185 CTTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGAGCCTTTGCCTCCATCTTTTGGCTGC 90126 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || || |||||||||||||| || |||||||| || || | || |||| Sbjct 90125 GCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCTAACGAGCTGATTTCTCGTGATGAGG 90066 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 ||||||| ||||||||||| || ||||| || || | || || || || Sbjct 90065 GTCTGCACACTGACTTTGCCTGCCTGTTGTTCTCCCACCTGAACAACCGCCCTGGCAAGG 90006 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | ||| | | ||| |||||||||| |||| ||| ||| || ||||| || || | Sbjct 90005 AACTTGTCGAGCAAATCATCACCGACGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGG 89946 Query 117288 CGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | || || ||| || | || || | || || |||| ||| || || |||||| Sbjct 89945 CTCTTCC-TTGCGGTTTACTCGGCATGAACGCTGACCTGATGAAGCAGTATATTGAGTTC 89887 Query 117347 GTCGCCGAC 117355 || |||||| Sbjct 89886 GTTGCCGAC 89878 >seq249 Length=46353 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||||||||||||| | || |||||| || || Sbjct 8115 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAAACCATCACCCTAGAAGTCGAATCCTCC 8174 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| || || | ||||| ||||| ||||| | || ||| Sbjct 8175 GATACTATTGACAATGTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAG 8234 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || ||||| |||||||| || | || |||||| |||||||||| Sbjct 8235 CAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAAC 8294 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| |||| || ||||| || Sbjct 8295 ATTCAAAAGGAGTCCACTCTCCATCTGGT 8323 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| ||||| || || || || ||||||||| | || |||||| || |||| | | Sbjct 7897 TCGTCAAAACCCTTACCGGAAAGACCATCACCCTAGAAGTCGAATCCTCCGATACTATTG 7956 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | |||| || || | ||||| ||||| ||||| |||| ||||| || || | Sbjct 7957 ACAATGTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTGA 8016 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | || ||||| |||||||| || | || |||||| |||||||||||||| |||| Sbjct 8017 TTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTGACTACAACATCCAAAAGG 8076 Query 40880 AGGCCACGCTGCATCTAGT 40898 || |||| || ||||| || Sbjct 8077 AGTCCACTCTCCATCTGGT 8095 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| | || ||||| | |||||| | | | | ||||| Sbjct 7618 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATCGACAATGTCAAGTCG 7677 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| || || ||||| || ||| | |||||||| || || || | ||| || || Sbjct 7678 AAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTAATTTTCGCCGGAAAG 7737 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || || |||| |||||||| |||||||||||||||||||||| | || || || Sbjct 7738 CAACTTGAGGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 7797 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 || || | ||| || | || || Sbjct 7798 CTGGTCCTCCGCCTGCGTGGTGG 7820 >seq404 Length=24851 Score = 109 bits (120), Expect = 6e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || || || || Sbjct 18271 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTTGAGTCC 18330 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | || || |||||||| ||| |||| Sbjct 18331 TCAGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 18390 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || || |||| ||| ||||| ||||| || || | |||||||| ||||||| Sbjct 18391 CAACAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGATGGCCGCACCCTGTCCGACTAC 18450 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 18451 AACATCCAGAAGG 18463 >seq133 Length=77988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 32364 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 32305 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| ||||||| || || || Sbjct 32304 GACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCT 32246 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | ||||| | |||||||||||||| || Sbjct 32245 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAAA 32186 Query 40878 GG 40879 || Sbjct 32185 GG 32184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213539029040