Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq249 102 9e-17 >seq249 Length=46353 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| |||||||||||| ||||| || | || || || | || || Sbjct 8323 ACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCC 8264 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || || |||||||| || | || | | ||||||||| | Sbjct 8263 AGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 8204 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || ||||| | | | || ||| ||||| || || | |||||||||||| Sbjct 8203 ATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTTTTG 8144 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| ||||| |||||||| Sbjct 8143 CCAGTGAGAGTCTTGACAAAAATTTGCAT 8115 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || || ||||| | | ||||| |||| ||| | || ||||||||| || ||||| Sbjct 8575 TACTGGCCTCCACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAG 8516 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| ||||| || | || || | |||||| || || || || || |||||||| || Sbjct 8515 TCAGAGAGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCT 8456 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | | |||||| || ||| || ||||| | | | || || || Sbjct 8455 GGGGGAATACCCTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGAC 8396 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | |||||||||||||| || || ||||| || ||||||||||| Sbjct 8395 TCAACCTCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811317154120