Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq53 196 6e-45 seq76 86.0 8e-12 >seq53 Length=118516 Score = 196 bits (216), Expect = 6e-45 Identities = 562/854 (66%), Gaps = 18/854 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| ||||| |||||||| |||||||| || || || || ||| || || || Sbjct 89753 TTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATGTTC 89812 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATT--CAGAAA 33408 |||||||| || || || |||||| || ||| | || | | |||| || || Sbjct 89813 TCCATGAAGTCGAAGGGGTTGGTAGCACGGTACACCTTGTCGT-TGCCAAGGGCCACTAA 89871 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | | || || ||||| || ||||| ||||||| ||| ||||| || || Sbjct 89872 GAGA-CGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATGCC---GA 89927 Query 33469 GTTTAACT---GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTA 33525 || | | ||||||||| |||| || || || | |||||| || || | || | Sbjct 89928 GTAAACCGCAAGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCGTCGGTGA 89987 Query 33526 TAATAAA-TCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT 33584 | || || | ||| ||| | || || ||| | || |||| || || Sbjct 89988 TGATTTGCTCGACAAGTTCCTTGCCAGGGCGGTTGTTC-AGGTGGGAGAACAACAGGCAG 90046 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || || |||||||||||| || | | ||| | ||||||||||| || || ||| Sbjct 90047 GCAAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCG 90106 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| || |||||||| |||||||| ||||| || || | ||| ||||||||||| Sbjct 90107 GGCATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCAGAAAAGAAGATG 90166 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATC 33761 ||||| || |||||||| || || || | || || || | | ||||| ||| Sbjct 90167 CCTTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTCTCTGTCGCAGATC 90226 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 ||||| ||||||| ||||| || || || || || || || || || || || Sbjct 90227 CACTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCAATAGCGTTGAAC 90286 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || || | | | || |||| |||||||||||||| | | || | || Sbjct 90287 AGGTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAAGAGTAGGTCTCG 90346 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || ||||| || || ||||| || || ||||| || | |||||| | ||||| Sbjct 90347 GAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCAGGGATCTGG 90406 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || | | || || || | | || || || ||||| |||||| ||| ||||| Sbjct 90407 ACCTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCAGAGGCAGCAAAG 90466 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTTAGTTTATTCCAATCA 34058 || |||| | || || || || | ||||| |||| | || ||||| || Sbjct 90467 AAGGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGGTTGTTCCAGTCG 90526 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118 | || |||||| |||| ||| | || || | ||||| || || ||||| ||||| || Sbjct 90527 TGGAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCCTCAGCCTTCTTG 90586 Query 34119 TACATATTCCAGAT 34132 ||||| | |||||| Sbjct 90587 TACATCTGCCAGAT 90600 >seq76 Length=103561 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | ||||| || |||||||||| |||| | ||||| ||||||||||| Sbjct 3903 TCCTGGTCAACAGTGAACTGGATGGGAGCGGCGGCGGCCTGGGTACGCAGATAGTACATG 3844 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 || || || ||||| || |||| || ||| ||||| || || | |||| | Sbjct 3843 CCAGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATGCTGGTGATTTTGCCCATGGTA 3784 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 |||||| || ||||| |||| || || ||||||||||| || || | || || Sbjct 3783 GGATCTTTCATGTGGATGTTCAGCGACTGCGACTGATCGATGAAAGCGCCACGATCGGCG 3724 Query 62214 GCCATTT 62220 ||||||| Sbjct 3723 GCCATTT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810679879120