Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq53 156 6e-33 seq76 86.0 8e-12 >seq53 Length=118516 Score = 156 bits (172), Expect = 6e-33 Identities = 376/566 (66%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || || || || ||| |||||||| || | | ||| | ||||| ||| Sbjct 90035 AACAACAGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAA 90094 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || |||||||| || |||||||| |||||||| ||||| ||||| | |||| Sbjct 90095 AAGGTCAGGCCGGGCATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCA 90154 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 |||||||| || ||||| || || ||||| || || || | || || || | | Sbjct 90155 GAAAAGAAGATGCCTTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTCT 90214 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 ||||| |||||||| ||||||| ||||| || || || || || || || Sbjct 90215 CTGTCGCAGATCCACTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCA 90274 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 ||||| || || || || | | | || |||| || ||||| ||||| | | Sbjct 90275 ATAGCGTTGAACAGGTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAA 90334 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || | || || || ||||| || || || || || || ||||| || | |||| Sbjct 90335 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCC 90394 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | ||||| || || | | || || || | | || || || ||||| || ||| Sbjct 90395 TCAGGGATCTGGACCTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCA 90454 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGT-GTTAGT 36622 ||| ||||| || |||| | || || || || | |||| ||||| | Sbjct 90455 GAGGCAGCAAAGAAGGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGG 90514 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 || ||||| || | || |||||| |||| ||| | || || | ||||| || || ||| Sbjct 90515 TTGTTCCAGTCGTGGAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCC 90574 Query 36683 TCTGCCTTTTTATACATATTCCAGAT 36708 || ||||| || ||||| | |||||| Sbjct 90575 TCAGCCTTCTTGTACATCTGCCAGAT 90600 >seq76 Length=103561 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||| || |||||||||| |||| | ||||| ||||||||||| Sbjct 3903 TCCTGGTCAACAGTGAACTGGATGGGAGCGGCGGCGGCCTGGGTACGCAGATAGTACATG 3844 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 || || || ||||| || |||| || ||| ||||| || || | |||| | Sbjct 3843 CCAGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATGCTGGTGATTTTGCCCATGGTA 3784 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 |||||| || ||||| |||| || || ||||||||||| || || | || || Sbjct 3783 GGATCTTTCATGTGGATGTTCAGCGACTGCGACTGATCGATGAAAGCGCCACGATCGGCG 3724 Query 65007 GCCATTT 65013 ||||||| Sbjct 3723 GCCATTT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165568326360