Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq53 179 5e-40 >seq53 Length=118516 Score = 179 bits (198), Expect = 5e-40 Identities = 557/852 (65%), Gaps = 14/852 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| ||||| |||||||| |||||||| || || || || ||| || || || Sbjct 89753 TTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATGTTC 89812 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATT--CAGAAA 49786 |||||||| || || || |||||| || || | || | | |||| || || Sbjct 89813 TCCATGAAGTCGAAGGGGTTGGTAGCACGGTACACCTTGTCGT-TGCCAAGGGCCACTAA 89871 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TA 49845 | | || || || || || ||||| ||||||| ||| ||||| || | || Sbjct 89872 GAGA-CGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATGCCGAGTA 89930 Query 49846 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 | | ||||||||| |||| || || || | |||||| || || || || || Sbjct 89931 AACCGCAA-GGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCGTCGGTGATG 89989 Query 49906 ATA-GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 || | || | ||| ||| | || || || | || |||| || || || Sbjct 89990 ATTTGCTCGACAAGTTCCTTGCCAGGGCGGTTGTTC-AGGTGGGAGAACAACAGGCAGGC 90048 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 || || |||||||||||| || | | ||| || ||||| ||||| || || ||||| Sbjct 90049 AAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCGGG 90108 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCC 50084 ||| || |||||||| |||||||| ||||| ||||| | |||||||||||||| || Sbjct 90109 CATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCAGAAAAGAAGATGCC 90168 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA 50141 ||| || || ||||| || | || | || || || | | | ||||| ||||| Sbjct 90169 TTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTCTCTGTCGCAGATCCA 90228 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 ||| ||||||| ||||| || || || || || || || || || || || || Sbjct 90229 CTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCAATAGCGTTGAACAG 90288 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 || | | | || |||| |||||||||||||| | | || | || || Sbjct 90289 GTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAAGAGTAGGTCTCGGA 90348 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 || ||||| || || ||||| || || ||||| || | |||||| | ||||| || Sbjct 90349 GTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCAGGGATCTGGAC 90408 Query 50322 TTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 || | | || || ||| | | || || || ||||| || ||| ||| ||||| || Sbjct 90409 CTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCAGAGGCAGCAAAGAA 90468 Query 50382 CGCCAATACATGTTTTATAA---AATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 |||| | || || | | || | || |||| | || ||||| || | Sbjct 90469 GGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGGTTGTTCCAGTCGTG 90528 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || |||||| |||| ||| | || || | ||||| || || ||||| ||||| || || Sbjct 90529 GAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTA 90588 Query 50499 CATATTCCAGAT 50510 ||| | |||||| Sbjct 90589 CATCTGCCAGAT 90600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260908021560