Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq249 125 5e-24
>seq249
Length=46353
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| |||||||| | | |||| ||||| |||| ||||||||| | ||||| |||||
Sbjct 8341 CCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAG 8282
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || |||| || |||||||||||||||| ||||| ||||| | ||
Sbjct 8281 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGG 8222
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||| || || || |||| | |||||| || ||| || ||| | |||||
Sbjct 8221 ATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACT 8162
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || ||||| || || ||||| || ||||||||||||||
Sbjct 8161 TCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
|||||||||||| | | |||| ||| | || ||||||||| | ||||| || ||
Sbjct 8570 GCCTCCACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 8511
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| ||||| | || ||||| || |||||||||||||||| ||||| ||||| | ||
Sbjct 8510 GAGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGG 8451
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||| || || || |||| | |||||| || ||| || || || ||| ||
Sbjct 8450 AATACCCTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAAC 8391
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || ||||| || || ||||| || || || ||||||||
Sbjct 8390 CTCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| |||||||| | | |||| ||||| |||| ||||||||| | ||||| || ||
Sbjct 8113 CCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAG 8054
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || |||| || |||||||||||||||| ||||| ||||| | ||
Sbjct 8053 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGG 7994
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||| || || || |||| | |||||| || ||| || ||| | |||||
Sbjct 7993 ATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACT 7934
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
|||| || || || |||||||| || ||||| ||
Sbjct 7933 TCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGAC 7899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381365514458982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |