Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq53 185 1e-41 seq76 134 2e-26 >seq53 Length=118516 Score = 185 bits (204), Expect = 1e-41 Identities = 383/561 (68%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||| | || ||| | ||||| Sbjct 90600 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCTGAGGAGATTGATCTA 90541 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| || || |||| ||| | | || | || | |||| | || || || Sbjct 90540 TCCAAAGATCTCCACGACTGGAACAACCGGCTTACCAAGGACGAGCAGTACTTCATCTCT 90481 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| ||||||||||||| | ||| ||||| || |||||||| || || ||||| || Sbjct 90480 CACATTCTGGCCTTCTTTGCTGCCTCTGATGGCATAGTCAACGAGAACCTGGTTGA-GCG 90422 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 |||||| ||| | || || |||| ||| ||||| || || ||||| ||||||| Sbjct 90421 TTTCTCTGGCGAGGTCCAGATCCCTGAGG-CTCGTTGCTTCTATGGTTTCCAGATCATGA 90363 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TC 125313 | |||||| | ||||| || | |||||| |||| || | |||||| || | Sbjct 90362 TGGAGAACATCCACTCCGAGACCTACTCTTTGTTGATCGATACTTACATTAAGGAGCCTG 90303 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 | || || | || || || ||||| || ||||| | || | ||||| || | Sbjct 90302 CCCAGCGCACGTAC---CTGTTCAACGCTATTGACACCATTCCCTGCATACGCCGCAAAG 90246 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACTGGTG 125432 | | |||| | ||||||| ||| || || || | | || | | || | Sbjct 90245 CCGACTGGGCTCTCAAGTGGATCTGCGACAGAGAA-TCAACTTTTGCTCAGCGCCTAATC 90187 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || || |||||||||||||| || ||||| ||||||||||||| Sbjct 90186 GCTTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGAGCCTTTGCCTCCATCTTTTGGCTG 90127 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || |||||||| ||||| ||||||| | || ||||| || ||| Sbjct 90126 CGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCTAACGAGCTGATTTCTCGTGATGAG 90067 Query 125553 GGCCTACACTGTGACTTTGCC 125573 || || ||| |||||||||| Sbjct 90066 GGTCTGCACACTGACTTTGCC 90046 >seq76 Length=103561 Score = 134 bits (148), Expect = 2e-26 Identities = 324/485 (67%), Gaps = 4/485 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | || ||||| | || || ||||| || || Sbjct 2498 CAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCTATCTACCTAGAGCCGTGGCATGCCGAT 2557 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | ||||| ||| ||| || ||| || ||| | ||| Sbjct 2558 GTCTTCGAGTTCCTCGACCTACGCAAGAACCACGGCAAGGAGGAGATTCGTGCCCGCGAC 2617 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || || ||||||||||||| ||| | | | | || Sbjct 2618 CTGTTCCTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGAAGAACGCCAAC 2677 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || ||||||||| |||| |||| || || ||||| Sbjct 2678 TGGACACTCATGTGCCCCAACGAGTGCCCCGGTCTGGCCGACTGCTACGGTGACGAGTTC 2737 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| |||||||| || || | || | || | Sbjct 2738 GAGGCTCTGTACGAAAAGTACGAGAGCGAGGGCCGCGGCCGCCTCACCA-TCAAGGC-CC 2795 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||| || ||||| |||| |||| ||| || | Sbjct 2796 AGAAGCTATGGTACGCCATCCTCGAGGCCCAAACCGAGACCGGAAACCCGTTCATGCTGT 2855 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| || || | || |||||||| || ||||||| ||| |||||| Sbjct 2856 ACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGCACTATCCGCAGCTCCA 2915 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | |||||||| || || | |||||| | | || || ||| || || ||| ||||| Sbjct 2916 ACCTGTGCACCGAGATCATCGAGTACTGCGCCCCTGATGAGGTCGCTGTGTGCAATCTGG 2975 Query 97354 CATCG 97358 | ||| Sbjct 2976 CCTCG 2980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051057612040