Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq53 185 1e-41
seq76 134 2e-26
>seq53
Length=118516
Score = 185 bits (204), Expect = 1e-41
Identities = 383/561 (68%), Gaps = 12/561 (2%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| ||||||| || ||||| | || ||| | |||||
Sbjct 90600 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCTGAGGAGATTGATCTA 90541
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||| || || |||| ||| | | || | || | |||| | || || ||
Sbjct 90540 TCCAAAGATCTCCACGACTGGAACAACCGGCTTACCAAGGACGAGCAGTACTTCATCTCT 90481
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
|||||| ||||||||||||| | ||| ||||| || |||||||| || || ||||| ||
Sbjct 90480 CACATTCTGGCCTTCTTTGCTGCCTCTGATGGCATAGTCAACGAGAACCTGGTTGA-GCG 90422
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256
|||||| ||| | || || |||| ||| ||||| || || ||||| |||||||
Sbjct 90421 TTTCTCTGGCGAGGTCCAGATCCCTGAGG-CTCGTTGCTTCTATGGTTTCCAGATCATGA 90363
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TC 125313
| |||||| | ||||| || | |||||| |||| || | |||||| || |
Sbjct 90362 TGGAGAACATCCACTCCGAGACCTACTCTTTGTTGATCGATACTTACATTAAGGAGCCTG 90303
Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373
| || || | || || || ||||| || ||||| | || | ||||| || |
Sbjct 90302 CCCAGCGCACGTAC---CTGTTCAACGCTATTGACACCATTCCCTGCATACGCCGCAAAG 90246
Query 125374 CTCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACTGGTG 125432
| | |||| | ||||||| ||| || || || | | || | | || |
Sbjct 90245 CCGACTGGGCTCTCAAGTGGATCTGCGACAGAGAA-TCAACTTTTGCTCAGCGCCTAATC 90187
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| || || || || || |||||||||||||| || ||||| |||||||||||||
Sbjct 90186 GCTTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGAGCCTTTGCCTCCATCTTTTGGCTG 90127
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552
||||| || || |||||||| ||||| ||||||| | || ||||| || |||
Sbjct 90126 CGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCTAACGAGCTGATTTCTCGTGATGAG 90067
Query 125553 GGCCTACACTGTGACTTTGCC 125573
|| || ||| ||||||||||
Sbjct 90066 GGTCTGCACACTGACTTTGCC 90046
>seq76
Length=103561
Score = 134 bits (148), Expect = 2e-26
Identities = 324/485 (67%), Gaps = 4/485 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | || ||||| | || || ||||| || ||
Sbjct 2498 CAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCTATCTACCTAGAGCCGTGGCATGCCGAT 2557
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || |||| | ||||| ||| ||| || ||| || ||| | |||
Sbjct 2558 GTCTTCGAGTTCCTCGACCTACGCAAGAACCACGGCAAGGAGGAGATTCGTGCCCGCGAC 2617
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
|||| || || ||| | || || ||||||||||||| ||| | | | | ||
Sbjct 2618 CTGTTCCTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGAAGAACGCCAAC 2677
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || || ||||||||| |||| |||| || || |||||
Sbjct 2678 TGGACACTCATGTGCCCCAACGAGTGCCCCGGTCTGGCCGACTGCTACGGTGACGAGTTC 2737
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
||||| |||| |||||| |||||||| || || | || | || |
Sbjct 2738 GAGGCTCTGTACGAAAAGTACGAGAGCGAGGGCCGCGGCCGCCTCACCA-TCAAGGC-CC 2795
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||| || ||||| |||| |||| ||| || |
Sbjct 2796 AGAAGCTATGGTACGCCATCCTCGAGGCCCAAACCGAGACCGGAAACCCGTTCATGCTGT 2855
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| || || | || |||||||| || ||||||| ||| ||||||
Sbjct 2856 ACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGCACTATCCGCAGCTCCA 2915
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| |||||||| || || | |||||| | | || || ||| || || ||| |||||
Sbjct 2916 ACCTGTGCACCGAGATCATCGAGTACTGCGCCCCTGATGAGGTCGCTGTGTGCAATCTGG 2975
Query 97354 CATCG 97358
| |||
Sbjct 2976 CCTCG 2980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741051057612040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |