Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq195 181 2e-41 seq8 109 9e-20 >seq195 Length=58616 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || || || ||||| || | Sbjct 8444 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATTACTAAGCCCGCCA 8386 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || ||||||||||| ||||||||| | |||| || | || || |||| Sbjct 8385 TCCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATTTCTGCCATGATATACGAGGAGA 8326 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | |||| | ||| ||||||| || || |||| |||||| || ||| || | Sbjct 8325 CTCGCGGTGTTCTTAAGTCCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTG 8266 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| ||||| ||||||| || | || | |||| Sbjct 8265 AGCACGCCAAGCGCAAGACCGTCACCTCGCTGGATGTCGTCTACGCCCTCAAGAGACAAG 8206 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| || ||||| Sbjct 8205 GCCGTACCCTGTACGGTTTCGGTGGTTAA 8177 >seq8 Length=190646 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 37948 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 37890 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | || ||||| |||||||||||||| ||||||||| | |||| Sbjct 37889 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 37848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074396324147