Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq53 197 2e-45 seq76 114 2e-20 >seq53 Length=118516 Score = 197 bits (218), Expect = 2e-45 Identities = 562/852 (66%), Gaps = 14/852 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| ||||| |||||||| |||||||| || || || || ||| || || || Sbjct 89753 TTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATGTTC 89812 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATT--CAGAAA 33130 |||||||| || || || |||||| || || | || | | |||| || || Sbjct 89813 TCCATGAAGTCGAAGGGGTTGGTAGCACGGTACACCTTGTCGT-TGCCAAGGGCCACTAA 89871 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TA 33189 | | || || ||||| || ||||| ||||||| ||| ||||| || | || Sbjct 89872 GAGA-CGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATGCCGAGTA 89930 Query 33190 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 | | ||||||||| |||| || || || | |||||| || || || || || Sbjct 89931 AACCGCAA-GGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCGTCGGTGATG 89989 Query 33250 ATA-GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 || | || | ||| ||| | || || || | || |||| || || || Sbjct 89990 ATTTGCTCGACAAGTTCCTTGCCAGGGCGGTTGTTC-AGGTGGGAGAACAACAGGCAGGC 90048 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 || || |||||||||||| || | | ||| || ||||| ||||| || || ||||| Sbjct 90049 AAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCGGG 90108 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||| || |||||||| |||||||| ||||| || || | ||||||||||||||| || Sbjct 90109 CATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCAGAAAAGAAGATGCC 90168 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA 33485 ||| || |||||||| || || || | || || || | | ||||| ||||| Sbjct 90169 TTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTCTCTGTCGCAGATCCA 90228 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 ||| ||||||| ||||| || || || || || || || || || || || || Sbjct 90229 CTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCAATAGCGTTGAACAG 90288 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 || | | | || |||| |||||||||||||| | | || | || || Sbjct 90289 GTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAAGAGTAGGTCTCGGA 90348 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 || ||||| || || ||||| || || ||||| || | |||||| | ||||| || Sbjct 90349 GTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCAGGGATCTGGAC 90408 Query 33666 TTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 || | | || || || ||| || || || ||||| || ||| ||| ||||| || Sbjct 90409 CTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCAGAGGCAGCAAAGAA 90468 Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTTAGTTTATTCCAATCATT 33782 |||| | || || || || | ||||| |||| | || ||||| || | Sbjct 90469 GGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGGTTGTTCCAGTCGTG 90528 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 || |||||| |||| ||| | || || | ||||| || || ||||| ||||| || || Sbjct 90529 GAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTA 90588 Query 33843 CATGTTCCAGAT 33854 ||| | |||||| Sbjct 90589 CATCTGCCAGAT 90600 >seq76 Length=103561 Score = 114 bits (126), Expect = 2e-20 Identities = 452/703 (64%), Gaps = 16/703 (2%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||||||||| || | | | ||| || || || || | || ||||| | | | Sbjct 2739 TCGAACTCGTCACCGTAGCAGTCGGCCAGACCGGGGCACTCGTTGGGGCACATGAGTGTC 2680 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || | ||| | || || || ||||| || || || |||||||| || |||| || Sbjct 2679 CAGTTGGCGTTCTTCTCGACACGCTTCATGAACAGGTCGGGAATCCACAGGGCTAGGAAC 2620 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || || | || | | ||||| || || ||||| || ||||||||| | | Sbjct 2619 AGGTCGCGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGTAGGTCGAGGAACTCGAAG 2560 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | ||| | ||||||||| || | ||| || || | ||||||| || ||||| || ||| Sbjct 2559 ACATCGGCATGCCACGGCTCTAGGTAGATAGCAAAGGCTCCAGGGCGCTTGTTGCCACCC 2500 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | || | |||||||| || | || | || ||| || | || |||||||| Sbjct 2499 TGGTCAACATAGCGGGCGGTGTTGTTGAAGACGCGCAGCATGGGCACGATGCCGTTTGAC 2440 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 | || || || || | || || || |||| || ||| | || || Sbjct 2439 GTGCCGTTAGTGCCAGCAATGTACGAGCCGGTGGCGCGGATACGGTGGACGTTCAGGCCA 2380 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || ||||| || ||||| | || || || | ||| || ||||||||||| Sbjct 2379 ATACCACCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCCTCA 2320 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG---TGACGACTAGTT 63614 ||||| ||||| |||||| | | || || || | ||| || || | || Sbjct 2319 ATGCTGTCATCCTTCATGTCGACCAAGAAGCATGACGATAGCTGGGCCTG-CGGC--GTG 2263 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGT-AAACCATTTTTCAGAAAGTAGATTGTA 63673 || || || || | ||||| || ||||| || ||| || | | |||| ||||| Sbjct 2262 CCAGCGTTGAACAGCGTAGGTGAGGCGTGTGTGAAAAGCTTACTGGACATGTAG-TTGTA 2204 Query 63674 CGTCTCAATAGCTGAGTCTATA---TC-CCATTGATGAATTCCTACTGCGACACGCATTA 63729 |||||| | | ||| | | || || | || || || || |||||||| | Sbjct 2203 CGTCTCGAGCACACGGTCGACACGGTCGCCCCAG----ATACCGACGGCAACACGCATGA 2148 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||| || | || ||||||||| || | || | || || ||| |||| Sbjct 2147 TCATGTGCTGCGGACGCTCGACGATCTTGCCGTCCAACTTGAGCAGATACGATCGCTCCA 2088 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 | |||||||| ||||| || | ||| |||||| || ||||| Sbjct 2087 AGGTTTTAAAGCCAAAGTACTGGTAGTTAAAGTCACGATCGTA 2045 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | ||||| || |||||||||| |||| | ||||| ||||||||||| Sbjct 3903 TCCTGGTCAACAGTGAACTGGATGGGAGCGGCGGCGGCCTGGGTACGCAGATAGTACATG 3844 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 || || || ||||| || |||| || ||| ||||| || || | |||| | Sbjct 3843 CCAGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATGCTGGTGATTTTGCCCATGGTA 3784 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 |||||| || ||||| |||| || || ||||||||||| || || | || || Sbjct 3783 GGATCTTTCATGTGGATGTTCAGCGACTGCGACTGATCGATGAAAGCGCCACGATCGGCG 3724 Query 62163 GCCATTT 62169 ||||||| Sbjct 3723 GCCATTT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940355367640