Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq53 156 9e-33 seq86 125 1e-23 seq523 98.7 2e-15 >seq53 Length=118516 Score = 156 bits (172), Expect = 9e-33 Identities = 537/825 (65%), Gaps = 23/825 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | ||||||| ||||||| || ||||||||||||||||||||| || Sbjct 89777 TCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTA 89836 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| |||| |||| | |||||| || || |||| ||||| || || ||||| | | Sbjct 89837 GCACGGTACACCTTGTCGTTGCCAAGGGCCACTAAGAGACGGTCGGCAACGAACTCAATA 89896 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| |||| ||||||||| | | || ||||||| |||||| | | Sbjct 89897 TACTGCTTCATCAGGTCAGCGTTCATGCCGAGTAAACCGCAAGGAAGAGCCTCAGTCAGG 89956 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-----CTGTGCCAGAG 251797 || ||||| || || | || || || | ||| || || | |||||| | Sbjct 89957 AACTCCTTCTCAATGACGACGGCGTCGGTGATGATTTGCTCGACAAGTTCCTTGCCAGGG 90016 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 | ||||| ||| | ||| ||| || | |||| | |||||||||||| | Sbjct 90017 --CGGTTGTT---CAGGTGGGAGAACAACAGGCAGGCAAAGTCAGTGTGCAGACCCTCAT 90071 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| || | |||||| || | |||||| ||||||| ||||| || | |||| Sbjct 90072 CACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCGGGCATCAGACCACGCTTGCGCAGCC 90131 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 | ||||| | | ||||| |||||| || | | || |||||| | | || | | Sbjct 90132 AAAAGATGGAGGCAAAGGCTCCAGAAAAGAAGATGCCTTCGACAGCAGCAAAAGCGATTA 90191 Query 251978 GGCGCTCAGCAAACGACTTG--TC-CTG-CG-ACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||||| |||||| | ||| || ||| || | | |||| | ||||| | || || Sbjct 90192 GGCGCTGAGCAAA--AGTTGATTCTCTGTCGCAGATCCACTTGAGAGCCCAGTCGGCTTT 90249 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 | | ||| || || || || || | || || | | |||| |||| || Sbjct 90250 GCGGCGTATGCAGGGAATGGTGTCAATAGCGTTGAACAGGTACGTGCGCTGGGCAGGCTC 90309 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || ||| | ||| | || | |||||| |||| || |||||| || | | || Sbjct 90310 CTTAATGTAAGTATCGATCAACAAAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGAT 90369 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGG-TCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| || ||||||| ||| || |||| || | ||| || || || | Sbjct 90370 CTGGAAACCATAGAAGCAACGAGCCTCAGGGATCTG-GACCTCGCCAGAGAAACGCTCAA 90428 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || |||||||| | | ||||||||| | |||||| ||||| Sbjct 90429 CCAGGTTCTCGTTGACTATGCCATCAGAGGCAGCAAAGAAGGCCAGAATGTGAGAGATGA 90488 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC--GGCAATGTCCTGATTCAGAGG 252329 ||| |||| || | | | ||| || |||||| || || | ||| ||| Sbjct 90489 AGTACTGCTCGTCCTTGGTAAGCCGGTTGTTCCAGTCGTGGAGATCTTTGGAT--AGATC 90546 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || || || | |||||||| | || | | |||||||||||||| Sbjct 90547 AATCTCCTCAGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 90591 >seq86 Length=98809 Score = 125 bits (138), Expect = 1e-23 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383 || ||| |||| |||| ||||||||||||||| |||| |||||| ||||| || Sbjct 85511 GCTGAGGAGGATGATGAGGAAGGTGAGGATCTGTGCAACTGCACTTTCTCTCTCGCCTAC 85452 Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 |||| |||||||| || ||| |||| ||| | ||||||||| | || || ||| Sbjct 85451 GGTGCTAAGATTCTTCTCAACCAGACCCACCTGCGTCTAAAGCGTGGCCAGCGCTACGGT 85392 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || |||||| || || | || ||| ||||| ||||| ||||| |||| ||| Sbjct 85391 CTTTGCGGTCCAAACGGTTCTGGAAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAG 85332 Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 | || ||||| ||||| ||| |||||||| | ||| || | || ||||||||| | || Sbjct 85331 GTTGAGGGATTCCCTAA-GCAGTCTGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGA 85273 Query 279563 CTC 279565 ||| Sbjct 85272 CTC 85270 >seq523 Length=13207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 279689 TCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCAT 279748 || ||| || || || |||| |||||||||||||||||||| ||||| |||| || || Sbjct 6369 TCAGCCTGTCGGCTCATTGTCTGGTGGTTGGAAGATGAAGCTAGCCCTTGCTCGTGCTAT 6428 Query 279749 TCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAA 279808 |||| | || ||||| || |||||||| || || ||||| || |||| |||| Sbjct 6429 GCTACAGAAGGCTGATGTTCTTCTGCTTGACGAACCTACCAATCATTTGGATGTTGCCAA 6488 Query 279809 CGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTC 279868 || ||||||| | ||| ||| || | | | | || || ||||| || Sbjct 6489 TGTGAAGTGGCTAGAAACTTACTTAAAGAGCCACCCCGACATCACCTCACTGATTGTTTC 6548 Query 279869 TCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 |||||||||||| ||| | |||| || | ||| |||| |||||| ||| Sbjct 6549 TCACGACTCTGGTTTCTTGGATGAGGTAACCACTGACATCTATCACTACGAG 6600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825224309239