Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq249 154 3e-32
seq404 150 3e-31
seq133 143 5e-29
seq53 104 4e-17
>seq249
Length=46353
Score = 154 bits (170), Expect = 3e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
|||| | ||||| || || |||| |||| ||||| || ||||| ||||||||||| |
Sbjct 8577 TTTACTGGCCTCCACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGT 8518
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| || ||||| || | ||||| || |||||||| ||||| || || || | || || |
Sbjct 8517 AGTCAGAGAGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGAT 8458
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
| || ||||| || ||||| ||||| ||||| | ||||| || || || || | |
Sbjct 8457 CTGGGGGAATACCCTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAG 8398
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || || || | |||||||||||| || ||||| ||||||||||| || |||||
Sbjct 8397 ACTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || |||||||| ||||| ||||| || ||||||
Sbjct 8341 CCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAG 8282
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || | || || || || ||
Sbjct 8281 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGG 8222
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| | ||||| || || || || | ||||| |||
Sbjct 8221 ATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACT 8162
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||||||| || ||||| |||||||| || || |||||
Sbjct 8161 TCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 134 bits (148), Expect = 3e-26
Identities = 160/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || |||||||| ||||||||||| || || |||
Sbjct 8113 CCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAG 8054
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || | || || || || ||
Sbjct 8053 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGG 7994
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| | ||||| || || || || | ||||| |||
Sbjct 7993 ATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACT 7934
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | ||||||||| ||||| || ||||| |||||||
Sbjct 7933 TCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACGA 7897
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || || ||||| || |||||||| || |||||
Sbjct 7820 CCACCACGCAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 7761
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| |||||||| || || | || ||||| || |||
Sbjct 7760 AGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGGGGA 7701
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| | |||||| ||||||||||| | || || ||
Sbjct 7700 ATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCGACC 7641
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | |||||||| || || ||
Sbjct 7640 TCAAGAGTGATGGTCTTGCCGGT 7618
>seq404
Length=24851
Score = 150 bits (166), Expect = 3e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| || || | ||||| |||| |||||| || ||||| ||
Sbjct 18461 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCTAGCTGCTTGCCAGCGAAGATC 18402
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | ||||| || || |||||||| ||||| || || ||||| | |||||| |||
Sbjct 18401 AGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 18342
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|||||||||| || || || || | |||||| || || ||||| ||||||||||||||
Sbjct 18341 ATGGTGTCTGAGGACTCAACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTGACGAAA 18282
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 18281 ATCTGCAT 18274
>seq133
Length=77988
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
||||||||||| || || || | || | ||||| || | |||||| || ||||| ||
Sbjct 32186 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 32245
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | |||||||| || |||||||| ||||||||||| ||||| | ||||||| |||
Sbjct 32246 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 32305
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | || || || |||| ||| ||||| || ||||| ||||||||||||||
Sbjct 32306 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 32364
>seq53
Length=118516
Score = 104 bits (114), Expect = 4e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
|| || ||||||||||| || || || |||||| ||||||| ||||||| | ||
Sbjct 89744 ACACCGGCCTTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGA 89803
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058
|||||| |||||||||||| |||||||| || | || |||| || || ||
Sbjct 89804 GAAATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCACGGTACACCTTGTCGTTGCCAAGG 89863
Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118
|| || | ||||| || |||||||| || ||||| |||||||||| | |||||||
Sbjct 89864 GCCACTAAGAGACGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATG 89923
Query 10119 CC 10120
||
Sbjct 89924 CC 89925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921612273673880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |