Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq249 127 5e-24
seq404 116 9e-21
>seq249
Length=46353
Score = 127 bits (140), Expect = 5e-24
Identities = 167/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || ||||| | ||| || ||||| || || ||||||| |
Sbjct 8341 CCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAG 8282
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365
|| || || || || || | || || || || || ||||||||||| ||| |||||
Sbjct 8281 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGA---TCTGGA 8225
Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||| || || || || ||||| |||| ||| || || || |||| |||| |||||
Sbjct 8224 GGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCG 8165
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| || || || || ||||||||||| || || |||||
Sbjct 8164 ACTTCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 122 bits (134), Expect = 2e-22
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || ||||| | ||| || |||||||| || ||||| | |
Sbjct 8113 CCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAG 8054
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || || ||||||||||| ||| |||
Sbjct 8053 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGG 7994
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || ||||| |||| ||| || || || |||| |||| ||||| |||
Sbjct 7993 ATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACT 7934
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|| || ||||| ||||| ||||| || || |||||||
Sbjct 7933 TCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACGA 7897
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | ||| || || || || || || || || || || ||
Sbjct 8533 TCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAA 8474
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| ||| |||||| || || || ||||| ||||| |||| ||| ||
Sbjct 8473 ATCAGACGCTGCTGA---TCTGGGGGAATACCCTCCTTATCTTGGATCTTCGATTTGACA 8417
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || |||| ||| || || || || || ||||| || || || || |||||||||
Sbjct 8416 TTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTG 8357
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 8356 ACGAAGATTTGCAT 8343
>seq404
Length=24851
Score = 116 bits (128), Expect = 9e-21
Identities = 141/191 (74%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || ||||| || || |||| || || || |||||||||
Sbjct 18461 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCTAGCTGCTTGCCAGCGAAGATC 18402
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||||||| || ||| || || || ||||||||||| || | || || ||
Sbjct 18401 AGGCGCTGTTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTG 18345
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || || || ||||||||||| || || || |||||||||
Sbjct 18344 TCGATGGTGTCTGAGGACTCAACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTGACG 18285
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 18284 AAAATCTGCAT 18274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179641114510962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |