Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq53 120 7e-22 seq86 91.5 3e-13 >seq53 Length=118516 Score = 120 bits (132), Expect = 7e-22 Identities = 306/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTT 243347 |||||| |||| || |||| | | ||| || ||||| || | ||||| || || | Sbjct 90204 TTTGCTCAGCGCCTAATCGCTTTTGC-TGCTGTCGAAGGCATCTTCTTTTCTGG-AGCCT 90147 Query 243348 CTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||| |||||||||||||||| || ||| ||||||| ||||| | ||||||| Sbjct 90146 TTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCTAACG 90087 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 || | || ||| || ||||| || ||| | || | || ||| || | | Sbjct 90086 AGCTGATTTCTCGTGATGAGGGTCTGCACACTGACTTTGCCTGCCTGTTGTTCTCCCACC 90027 Query 243467 TCCAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 | |||||| | || | | ||| ||| | ||||||||||| || || || | | Sbjct 90026 T---GAACAACCGCCCTGGCAAGGAACTTGTCGAGCAAATCATCACCGACGCCGTCGTCA 89970 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCTGAA 243582 || ||||| ||| | || ||| |||| || ||| ||| | ||||||||| |||| Sbjct 89969 TTGAGAAGGAGTTCCTGACTGAGGCTCTTCCTTG-CGGTTTACTCGGCATGAACGCTGAC 89911 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 || ||| ||||| || || ||||| |||||||| | || | || ||||| | || Sbjct 89910 CTGATGAAGCAGTATATTGAGTTCGTTGCCGACCGTCTCTTAGTGGCCCTTGGCAACGAC 89851 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | | |||||||| | ||| |||||| |||||| || || || Sbjct 89850 AAGGTGTACCGTGCTACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGGGGGCAAG 89791 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||| ||||| || ||||| |||| || || Sbjct 89790 ACCAACTTTTTCGAGAAACGTGTTGGTGACTACCA 89756 >seq86 Length=98809 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 334182 GGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCG 334241 ||||| || |||| ||| |||| || || ||||| ||||| || || || | ||| Sbjct 85318 GGGAATCCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTTCCAGAACCG 85377 Query 334242 TTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGA 334301 ||||| || || ||||||||||| | |||||||| ||| | | || | ||| ||| Sbjct 85378 TTTGGACCGCAAAGACCGTAGCGCTGGCCACGCTTTAGACGCAGGTGGGTCTGGTTGAGA 85437 Query 334302 AGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || || ||||| || || | |||||||||||||| Sbjct 85438 AGAATCTTAGCACCGTAGGCGAGAGAGAAAGTGCAGTTGCACAGATCCTCACC 85490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867579158650