Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq249 127 2e-24 >seq249 Length=46353 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||| | || || || |||||||||||||| || | Sbjct 8342 ACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 8283 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | || || ||||||||||||||| |||| || |||||||| || ||||| Sbjct 8282 GAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGG 8223 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || || ||| || | ||||| || || || Sbjct 8222 GATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGAC 8163 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||| ||||| || | ||| || || ||||||||||| Sbjct 8162 TTCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||| | || || || ||||| |||||||| || | Sbjct 8114 ACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 8055 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | || || ||||||||||||||| |||| || |||||||| || ||||| Sbjct 8054 GAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGG 7995 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || || ||| || | ||||| || || || Sbjct 7994 GATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGAC 7935 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 ||||| || | |||||| ||||| | ||||| |||| Sbjct 7934 TTCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACGA 7897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || ||||| |||||||| || | || || || | || Sbjct 8554 AGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCC 8495 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||||||| |||| || |||||||| || || ||||| || || || ||| Sbjct 8494 TCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTATCT 8435 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || || ||| || | |||||| | || || || | || | ||| Sbjct 8434 TGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATGGTT 8375 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||| || ||||| |||||||| Sbjct 8374 TTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || || || || || |||||||| || | Sbjct 7821 ACCACCACGCAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 7762 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| ||||| ||||| ||||| |||| || ||||||||||| || || Sbjct 7761 CAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGGGG 7702 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| || | || || | || || Sbjct 7701 AATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCGAC 7642 Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419 || | ||| | |||||||||||| Sbjct 7641 CTCAAGAGTGATGGTCTTGCCGGT 7618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639310152760