Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq76 187 2e-42 >seq76 Length=103561 Score = 187 bits (206), Expect = 2e-42 Identities = 448/668 (67%), Gaps = 16/668 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||| ||||| ||||| ||||| || |||||| |||| ||| Sbjct 2060 AACTACCAGTACTTTGGCTTTAAAACCTTGGAGCGATCGTATCTGCTCAAGTTGGACGGC 2119 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | |||||| ||||| || || | ||||| || ||| |||| || ||| || Sbjct 2120 AAGATCGTCGAGCGTCCGCAGCACATGATCATGCGTGTTGCCGTCGGTATCTGGGGCGAC 2179 Query 93835 GACATGCCGAATGTTTTG-CGGG-CTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 | || ||| || | || | | | || ||||| ||| | || | Sbjct 2180 --CGTGTCGACCGTGTGCTCGAGACGTACAACTACATGTCCAGTAAGCTTTTCACACACG 2237 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGA 93952 || | || || ||||||||||| || || ||| | | ||| | || || || ||| || Sbjct 2238 CCTCACCTACGCTGTTCAACGCTGGCACGCCGCAGGCCCAGCTATCGTCATGCTTCTTGG 2297 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| ||| ||| || || | ||| | || ||| ||||| | Sbjct 2298 TCGAC-ATGAAGGATGACAGCATTGAGGGTATCTACGATACGCTGAAGACTTGTGCTATG 2356 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || || || | | |||||| |||| || |||| || | Sbjct 2357 ATCTCCAAGATGGCCGGTGGTATTGGCCTGAACGTCCAC--CGTATCCGCGCCACCGGCT 2414 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | ||||| || || || ||||| || |||||| |||| || ||||| || ||||||| Sbjct 2415 CGTACATTGCTGGCACTAACGGCACGTCAAACGGCATCGTGCCCATGCTGCGCGTCTTCA 2474 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || ||||| || ||||||||||| | | | || | || || ||| Sbjct 2475 ACAACACCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCTATCT 2534 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| ||||| || || || | ||| ||||||| || ||||||||||||| Sbjct 2535 ACCTAGAGCCGTGGCATGCCGATGTCTTCGAGTTCCTCGACCTACGCAAGAACCACGGCA 2594 Query 94250 ACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 | || ||||| | ||| | ||||| ||| || || ||| | || ||||| || | Sbjct 2595 AGGA---GGAGATTCGTGCCCGCGACCTGTTCCTAGCCCTGTGGATTCCCGACCTGTTCA 2651 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 |||| || |||||||| ||| || ||||| || | || ||||| || || ||||| | Sbjct 2652 TGAAGCGTGTCGAGAAGAACGCCAACTGGACACTCATGTGCCCCAACGAGTGCCCCGGTC 2711 Query 94367 TGTCCGAC 94374 || ||||| Sbjct 2712 TGGCCGAC 2719 Score = 132 bits (146), Expect = 5e-26 Identities = 266/387 (69%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 || |||||| | ||||||||| | ||| ||| | ||| | |||| ||||||| Sbjct 3326 CAAGGCATTCTGCAGTTCGACATGTGGAATGTCACCCCCAGCGACCTGTGGGACTGGGCC 3385 Query 95053 --GCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 |||| | | | ||| | || ||||||||| |||| ||||||| | ||||||| Sbjct 3386 TCGCTCAAAGAACAGATCA-AGCAG-CACGGTGTGCGAAACTCGCTGCTCCTAGCCCCCA 3443 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||| || || || || | || ||||| ||||||||||| | ||||| |||| ||| | Sbjct 3444 TGCCAACTGCTTCGACCTCTCAAATCCTGGGCAACAACGAATGCTTCGAGCCCTACACTT 3503 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 ||||| | ||| | | || ||| | || || || |||| ||| ||||| || | Sbjct 3504 CCAACATCTACCAACGTCGTGTGTTGGCTGGCGAGTTCCAGGTCGTCAACCCCTGGCTGC 3563 Query 95231 TACGGGACCT-GACGTCTCTGGGTGTGTGG---GGTGACAAGGTCAAGAACCAACTGCTA 95286 | |||||||| | || | || ||| | ||| | || || | ||||||| | | Sbjct 3564 TGCGGGACCTAGTCGAC-CTCGGTCTTTGGTCCGATGCCA---TGAAGAACCGTATCATC 3619 Query 95287 CGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTAC 95346 ||| |||||| || | |||||||| || || || | ||||||||||| | ||| Sbjct 3620 AGCGACAACGGTTCGATTCAGAACATTCCCAGTATCCCTGCCGACATCAAGGCCTTGTAC 3679 Query 95347 AAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||||| || ||||| ||| | |||||| Sbjct 3680 AAGACTGTCTGGGAAATCTCCCAGCGC 3706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717764228840