Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq76 114 1e-20 seq249 98.7 9e-16 >seq76 Length=103561 Score = 114 bits (126), Expect = 1e-20 Identities = 464/730 (64%), Gaps = 6/730 (1%) Strand=Plus/Plus Query 123592 TCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGA 123651 |||| | ||| ||| ||||||| |||| |||||| ||||| || ||||||||||||| Sbjct 2817 TCGAGGCCCAAACCGAGACCGGAAACCCGTTCATGCTGTACAAGGATGCCTGCAACAGGA 2876 Query 123652 AAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCG 123711 | | ||| |||| ||| |||| || || | || || ||| |||| || |||| Sbjct 2877 AGAGCAACCAGAAGAACCTGGGCACTATCCGCAGCTCCAACCTGTGCACCGAGATCATCG 2936 Query 123712 AATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT-----TTGCGTGAA 123766 | ||| ||| | ||| | || || ||||| ||| |||| ||| | | ||| Sbjct 2937 AGTACTGCGCCCCTGATGAGGTCGCTGTGTGCAATCTGGCCTCGCTGGCCCTACCGTCGT 2996 Query 123767 TCGTTGCGTCGAA-AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTG 123825 | || | | || || |||| | | | ||||| | ||| | || || || | Sbjct 2997 TTGTCGATTACAACAAGGGCGAGTATGACTTCCAGAAGCTGCACGAGATCACCAAGGTCG 3056 Query 123826 TAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTT 123885 | || || ||||| || ||||| || |||| |||||| || || || | | Sbjct 3057 TCGTGCGCAACCTGAACCGCATCATCGACGTCAATTATTATCCCGTGCCCGAGGCTCATA 3116 Query 123886 TGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTG 123945 ||| || ||| | || | ||||| || |||| || | ||||| || || Sbjct 3117 ACAGCAATATGCGCCACCGCCCTATTGGAGTTGGTGTTCAGGGTCTAGCCGATGCCTTCC 3176 Query 123946 TAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCG 124005 || || |||||||| | ||| | ||| || ||| |||| ||| || || Sbjct 3177 TAGCTCTACGCATGCCCTTCGAGTCTGCCGAGGCCCGCACGCTGAATAAGCAGATTTTCG 3236 Query 124006 AAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGT 124065 | || || || ||| ||| | || ||||| |||| | | | ||| | | Sbjct 3237 AGACCATCTACCACGCCGCCCTAACTGCCTCGTGCGAGATTGCTCAGACCGAAGGCACCT 3296 Query 124066 ACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATG 124125 || | || | |||| || | | ||| ||| |||||| |||||||||||||| Sbjct 3297 ACTCGACCTATGAGGGCTCTCCTGTTTCGCAAGGCATTCTGCAGTTCGACATGTGGAATG 3356 Query 124126 CTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTT 124185 || || | | ||||||||||| | | ||| ||| || | ||||||| Sbjct 3357 TCACCCCCAGCGACCTGTGGGACTGGGCCTCGCTCAAAGAACAGATCAAGCAGCACGGTG 3416 Query 124186 TGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAA 124245 |||| ||||||||| | | || |||||| || || | || ||||||| | || | Sbjct 3417 TGCGAAACTCGCTGCTCCTAGCCCCCATGCCAACTGCTTCGACCTCTCAAATCCTGGGCA 3476 Query 124246 ACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG 124305 ||||||||| ||||||||| | |||| ||| | ||| || || ||||| || |||| Sbjct 3477 ACAACGAATGCTTCGAGCCCTACACTTCCAACATCTACCAACGTCGTGTGTTGGCTGGCG 3536 Query 124306 ATTTTCAAGT 124315 | || || || Sbjct 3537 AGTTCCAGGT 3546 >seq249 Length=46353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || || ||||| || || || ||||||||||| || || || | Sbjct 8569 CCTCCACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 8510 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || || || || | |||| || ||||| || || ||| Sbjct 8509 AGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGA 8450 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || |||||||| || || ||||| || | || || |||||||| || Sbjct 8449 ATACCCTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACC 8390 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | |||||||| || ||||| || || || |||||||| Sbjct 8389 TCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || |||||||| || || || ||| || ||| ||| ||| Sbjct 8323 ACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCC 8264 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| || ||||| || || || || || || || ||||| Sbjct 8263 AGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 8204 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | || ||||| || |||||||| || || | |||||| Sbjct 8203 ATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTTTTG 8144 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||||||||| Sbjct 8143 CCAGTGAGAGTCTTGACAAAAATTTGCAT 8115 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| | ||| | || || Sbjct 7802 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCA 7743 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | || | || |||||||| || ||||| || || ||||| ||| Sbjct 7742 AGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGA 7683 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | |||||||||||||||||| || ||||| | || ||| Sbjct 7682 ATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTG 7623 Query 45312 CCGGTTA 45318 ||||||| Sbjct 7622 CCGGTTA 7616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998233614840