Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq76 114 1e-20
seq249 98.7 9e-16
>seq76
Length=103561
Score = 114 bits (126), Expect = 1e-20
Identities = 464/730 (64%), Gaps = 6/730 (1%)
Strand=Plus/Plus
Query 123592 TCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGA 123651
|||| | ||| ||| ||||||| |||| |||||| ||||| || |||||||||||||
Sbjct 2817 TCGAGGCCCAAACCGAGACCGGAAACCCGTTCATGCTGTACAAGGATGCCTGCAACAGGA 2876
Query 123652 AAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCG 123711
| | ||| |||| ||| |||| || || | || || ||| |||| || ||||
Sbjct 2877 AGAGCAACCAGAAGAACCTGGGCACTATCCGCAGCTCCAACCTGTGCACCGAGATCATCG 2936
Query 123712 AATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT-----TTGCGTGAA 123766
| ||| ||| | ||| | || || ||||| ||| |||| ||| | | |||
Sbjct 2937 AGTACTGCGCCCCTGATGAGGTCGCTGTGTGCAATCTGGCCTCGCTGGCCCTACCGTCGT 2996
Query 123767 TCGTTGCGTCGAA-AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTG 123825
| || | | || || |||| | | | ||||| | ||| | || || || |
Sbjct 2997 TTGTCGATTACAACAAGGGCGAGTATGACTTCCAGAAGCTGCACGAGATCACCAAGGTCG 3056
Query 123826 TAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTT 123885
| || || ||||| || ||||| || |||| |||||| || || || | |
Sbjct 3057 TCGTGCGCAACCTGAACCGCATCATCGACGTCAATTATTATCCCGTGCCCGAGGCTCATA 3116
Query 123886 TGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTG 123945
||| || ||| | || | ||||| || |||| || | ||||| || ||
Sbjct 3117 ACAGCAATATGCGCCACCGCCCTATTGGAGTTGGTGTTCAGGGTCTAGCCGATGCCTTCC 3176
Query 123946 TAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCG 124005
|| || |||||||| | ||| | ||| || ||| |||| ||| || ||
Sbjct 3177 TAGCTCTACGCATGCCCTTCGAGTCTGCCGAGGCCCGCACGCTGAATAAGCAGATTTTCG 3236
Query 124006 AAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGT 124065
| || || || ||| ||| | || ||||| |||| | | | ||| | |
Sbjct 3237 AGACCATCTACCACGCCGCCCTAACTGCCTCGTGCGAGATTGCTCAGACCGAAGGCACCT 3296
Query 124066 ACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATG 124125
|| | || | |||| || | | ||| ||| |||||| ||||||||||||||
Sbjct 3297 ACTCGACCTATGAGGGCTCTCCTGTTTCGCAAGGCATTCTGCAGTTCGACATGTGGAATG 3356
Query 124126 CTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTT 124185
|| || | | ||||||||||| | | ||| ||| || | |||||||
Sbjct 3357 TCACCCCCAGCGACCTGTGGGACTGGGCCTCGCTCAAAGAACAGATCAAGCAGCACGGTG 3416
Query 124186 TGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAA 124245
|||| ||||||||| | | || |||||| || || | || ||||||| | || |
Sbjct 3417 TGCGAAACTCGCTGCTCCTAGCCCCCATGCCAACTGCTTCGACCTCTCAAATCCTGGGCA 3476
Query 124246 ACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG 124305
||||||||| ||||||||| | |||| ||| | ||| || || ||||| || ||||
Sbjct 3477 ACAACGAATGCTTCGAGCCCTACACTTCCAACATCTACCAACGTCGTGTGTTGGCTGGCG 3536
Query 124306 ATTTTCAAGT 124315
| || || ||
Sbjct 3537 AGTTCCAGGT 3546
>seq249
Length=46353
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | || || ||||| || || || ||||||||||| || || || |
Sbjct 8569 CCTCCACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 8510
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | ||| ||||| || || || || | |||| || ||||| || || |||
Sbjct 8509 AGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGA 8450
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || |||||||| || || ||||| || | || || |||||||| ||
Sbjct 8449 ATACCCTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACC 8390
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | |||||||| || ||||| || || || ||||||||
Sbjct 8389 TCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || |||||||| || || || ||| || ||| ||| |||
Sbjct 8323 ACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCC 8264
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || || | |||| || ||||| || || || || || || || |||||
Sbjct 8263 AGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 8204
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || ||||| || | || ||||| || |||||||| || || | ||||||
Sbjct 8203 ATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTTTTG 8144
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||||||||||||
Sbjct 8143 CCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 89.7 bits (98), Expect = 5e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || || ||| | ||| | || ||
Sbjct 7802 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCA 7743
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| ||||| ||| | || | || |||||||| || ||||| || || ||||| |||
Sbjct 7742 AGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGA 7683
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || |||| || | |||||||||||||||||| || ||||| | || |||
Sbjct 7682 ATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTG 7623
Query 45312 CCGGTTA 45318
|||||||
Sbjct 7622 CCGGTTA 7616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451998233614840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |