Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq76 170 3e-37
>seq76
Length=103561
Score = 170 bits (188), Expect = 3e-37
Identities = 456/682 (67%), Gaps = 14/682 (2%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897
|| ||| || |||||||| |||| |||| |||||| | | ||||||||||||||
Sbjct 3901 CTGGTCAACAGTGAACTGGATGGGAGCGGCGGC-GGCCTGGGTACGCAGATAGTACATGC 3843
Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957
| ||||| || || || ||| || | ||||||| | | ||||| || | | |
Sbjct 3842 CAGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATGCTGGTGATTTTGCCCATGGTAG 3783
Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016
| || |||||| |||||||| ||||| || |||||||||| |||| ||||| |||
Sbjct 3782 GATCTTTCATGTGGATGTTCAGCGACTGCGACTGATCGATGAAAG-CGCCACGATCGGCG 3724
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076
||||| | | || ||| ||| || || ||||| || |||||| ||| | | || ||
Sbjct 3723 GCCATTTGCACAACGGTGCGCTGGGAGATTTCCCAGACAGTCTTGTACAAGGCCTTGATG 3664
Query 204077 TGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| ||| | | || | || |||| |||| ||||||||| || | | || |
Sbjct 3663 TCGGCAGGGATA-CTGGGAATGTTCTGAATCGAACCGTTGTCGCTGATGATACGGTTCTT 3605
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | | || ||| | || | || || ||||||| ||| |||||||| ||
Sbjct 3604 CATGGCATCGGACCAAAGACCGAGGTCGACTAGGTCCCGCAGCAGCCAGGGGTTGACGAC 3545
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || || | || ||| | || | | | |||| ||| | || |||||
Sbjct 3544 CTGGAACTCGCCAGCCAACACACGACGTTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCA 3485
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
||||||||||| | || |||| ||| || || |||||||| || |||||||| ||
Sbjct 3484 TTCGTTGTTGCCCAGGATTTGAGAGGTCGAAGCAGTTGGCATGGGGGCTAGGAGCAGCGA 3425
Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAGTCGTGCATCGCAC 204374
||| |||||||||| | | || ||| | || || |||| |||||| || | |
Sbjct 3424 GTTTCGCACACCGTGCTGCTTGA-TCTGTTCTTTGAGCGAGGCCCAGTCCCACAGGTCGC 3366
Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGT 204434
|||| | || ||||||||||||||| | |||||||| || || ||||| |
Sbjct 3365 TGGGGGTGACATTCCACATGTCGAACTGCAGAATGCCTTGCGAAACAGGAGAGCCCTCAT 3306
Query 204435 ACGTCGGATAAGGCTGATCCTC-TTCT--GCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491
| |||| || | || | || ||| || | || ||||||||| | | |||| |
Sbjct 3305 AGGTCGAGTA--GGTG-CCTTCGGTCTGAGCAATCTCGCACGAGGCAGTTAGGGCGGCGT 3249
Query 204492 AGTACATGGTCTCAAAGATCTG 204513
||| |||||||| || |||||
Sbjct 3248 GGTAGATGGTCTCGAAAATCTG 3227
Score = 100 bits (110), Expect = 5e-16
Identities = 440/684 (64%), Gaps = 12/684 (2%)
Strand=Plus/Minus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| ||| |||||| ||| | || || |||||| ||| ||| || || ||
Sbjct 2761 CTCGTACTTTTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTCGGCCAGACCGGGGCA 2702
Query 205120 TTTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGT 205178
| ||||| ||||| || | ||| | | || ||| || | || ||| |||||||
Sbjct 2701 CTCGTTGGGGCACATGAGTGTCCAGTTGGCGTTCTTCTCG-ACACGCTTCATGAACAGGT 2643
Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238
|| ||||||||| | ||||| || ||||| | ||| | || | || ||||||
Sbjct 2642 CGGGAATCCACAGGGCTAGGAACAGGTCGCGGGCACGAATCTCCTCCTTGCCGTGGTTCT 2583
Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297
| | ||| || || || | | ||||| ||||||||||||| | | || |
Sbjct 2582 TGCGTAGGTCGAGG-AACTCGAAGACATCGGCATGCCACGGCTCTAGGTAGATAGCAAAG 2524
Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357
|| || || | |||||| ||||||||||| || ||| | | |||||| || |||
Sbjct 2523 GCTCCAGGGCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGAAGACGCGC 2464
Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCC--TTCAG 205415
||||| ||||| | ||||| | || ||||| |||| ||| |||||| | |
Sbjct 2463 AGCATGGGCACGATGCCGTTTGACGTGCCGTTAGTGCCAGCAATGTACGAGCCGGTGGCG 2404
Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC-AC 205474
| ||| || || | | |||||| || || | ||||| |||| || | |
Sbjct 2403 CGGATACGGTG--GACGTTCAGGCCAATACCACCGGCCATCTTGGAGATCATAGCACAAG 2346
Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCA 205533
|||| ||| || |||||| || | ||| || ||| || |||| |||| ||||
Sbjct 2345 TCTT-CAGCGTATCGTAGATACCCTCAATGCTGTCATCCTTCA-TGTCGACCAAGAAGCA 2288
Query 205534 CGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593
|| | |||| ||| ||||| |||| ||| ||||| || |||||| ||||
Sbjct 2287 TGACGATAGCTGGGCCTGCGGCGTGCCAGCGTTGAACAGCGTAGGTGAGGCGTGTGTGAA 2228
Query 205594 GCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAAT 205653
|||| | || | |||| ||||| ||||| | || | | | ||| ||
Sbjct 2227 AAGCTTACTGGACATGTAGTTGTACGTCTCGAGCACACGGTCGACACGGTCGCCCCAGAT 2168
Query 205654 ACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTT 205713
||| | ||| | | ||||| | ||| || || | ||| | | | | ||| || |||
Sbjct 2167 ACCGACGGCAACACGCATGATCATGTGCTGCGGACGCTCGACGATCTTGCCGTCCAACTT 2108
Query 205714 GAGCAGATAGGCTCTCTCTAGGGT 205737
||||||||| | || ||| | |||
Sbjct 2107 GAGCAGATACGATCGCTCCAAGGT 2084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795146463232240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |