Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq249 118 2e-21 seq133 113 1e-19 seq404 107 5e-18 >seq249 Length=46353 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| | || || | || || Sbjct 7805 AGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCC 7746 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||||||||| || |||||||||||||| || ||| || || ||| Sbjct 7745 TCAAGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCC 7686 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 7685 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 7626 Query 199598 TTACCCGT 199605 || || || Sbjct 7625 TTGCCGGT 7618 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| ||||||||||| | ||||||||| | | || | ||||| Sbjct 8326 AGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGGCCATCC 8267 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| || || ||||||||||| || ||| || || || || Sbjct 8266 TCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCT 8207 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | || || | | ||| || || | ||||| || Sbjct 8206 TGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTT 8147 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||||||||| Sbjct 8146 TTGCCAGTGAGAGTCTTGACAAAAATTTG 8118 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| ||||||||||||| ||||||||||| | || | ||||| Sbjct 8098 AGAACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGGCCATCC 8039 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| || || ||||||||||| |||||| || || || || Sbjct 8038 TCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCT 7979 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | || || | | ||| || || | ||||| ||| Sbjct 7978 TGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTC 7919 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || || || ||||| || Sbjct 7918 TTTCCGGTAAGGGTTTTGAC 7899 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || ||||||||||||| ||||||||||| | ||| Sbjct 8563 CGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 8504 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| ||||| || || ||||||||||| || || ||| || Sbjct 8503 CGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACCC 8444 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || || || | || || | | || || || | Sbjct 8443 TCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACCTCAAGG 8384 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || || ||||| Sbjct 8383 GTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTG 8346 >seq133 Length=77988 Score = 113 bits (124), Expect = 1e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| |||||| | ||||| || |||||||| || ||||||| Sbjct 32184 CCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 32243 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||| |||||||| ||| || || || || ||||| ||| ||| | Sbjct 32244 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGT 32303 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || |||| || || ||||||||||| || || || || | Sbjct 32304 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 32363 Query 199620 AA 199621 || Sbjct 32364 AA 32365 >seq404 Length=24851 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | || || | ||||| || |||||||| || ||||||| Sbjct 18463 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCTAGCTGCTTGCCAGCGAAGA 18404 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||| || ||||| ||| || || ||||| ||||| ||| || | Sbjct 18403 TCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGT 18344 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||||| | || || || | ||||||||||||||||| || || || || | Sbjct 18343 CGATGGTGTCTGAGGACTCAACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTGACGA 18284 Query 199620 AAATTTG 199626 |||| || Sbjct 18283 AAATCTG 18277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908322763893